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Pubs
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Renfrew PD, Craven TW, Butterfoss GL, Kirshenbaum K, Bonneau R (2014)
A rotamer library to enable modeling and design of peptoid foldamers.
J Am Chem Soc 136:8772-82 -
Song WJ, Sontz PA, Ambroggio XI, Tezcan FA (2014)
Metals in protein-protein interfaces.
Annu Rev Biophys 43:409-31 -
Sripakdeevong P, Cevec M, Chang AT, Erat MC, Ziegeler M, Zhao Q, Fox GE, Gao X, Kennedy SD, Kierzek R, Nikonowicz EP, Schwalbe H, Sigel RK, Turner DH, Das R (2014)
Structure determination of noncanonical RNA motifs guided by ¹H NMR chemical shifts.
Nat Methods 11:413-6 -
London N, Ambroggio X (2014)
An accurate binding interaction model in de novo computational protein design of interactions: if you build it, they will bind.
J Struct Biol 185:136-46 -
Xia Y, DiPrimio N, Keppel TR, Vo B, Fraser K, Battaile KP, Egan C, Bystroff C, Lovell S, Weis DD, Anderson JC, Karanicolas J (2013)
The designability of protein switches by chemical rescue of structure: mechanisms of inactivation and reactivation.
J Am Chem Soc 135:18840-9 -
Jackson EL, Ollikainen N, Covert AW 3rd, Kortemme T, Wilke CO (2013)
Amino-acid site variability among natural and designed proteins.
PeerJ 1:e211 -
Ollikainen N, Kortemme T (2013)
Computational protein design quantifies structural constraints on amino acid covariation.
PLoS Comput Biol 9:e1003313 -
Das R (2013)
Atomic-accuracy prediction of protein loop structures through an RNA-inspired Ansatz.
PLoS One 8:e74830 -
Kilambi KP, Pacella MS, Xu J, Labonte JW, Porter JR, Muthu P, Drew K, Kuroda D, Schueler-Furman O, Bonneau R, Gray JJ (2013)
Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27.
Proteins 81:2201-9 -
Kahraman A, Herzog F, Leitner A, Rosenberger G, Aebersold R, Malmstrom L (2013)
Cross-link guided molecular modeling with ROSETTA.
PLoS One 8:e73411