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Pubs
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Malmström L, Riffle M, Strauss CE, Chivian D, Davis TN, Bonneau R, Baker D (2007)
Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology.
PLoS Biol 5:e76 -
Tsemekhman K, Goldschmidt L, Eisenberg D, Baker D (2007)
Cooperative hydrogen bonding in amyloid formation.
Protein Sci 16:761-4 -
Watters AL, Deka P, Corrent C, Callender D, Varani G, Sosnick T, Baker D (2007)
The highly cooperative folding of small naturally occurring proteins is likely the result of natural selection.
Cell 128:613-24 -
Leaver-Fay A, Butterfoss GL, Snoeyink J, Kuhlman B (2007)
Maintaining solvent accessible surface area under rotamer substitution for protein design.
J Comput Chem 28:1336-41 -
Catterall WA, Cestele S, Yarov-Yarovoy V, Yu FH, Konoki K, Scheuer T (2007)
Voltage-gated ion channels and gating modifier toxins.
Toxicon 49:124-41 -
Shcherbata HR, Yatsenko AS, Patterson L, Sood VD, Nudel U, Yaffe D, Baker D, Ruohola-Baker H (2007)
Dissecting muscle and neuronal disorders in a Drosophila model of muscular dystrophy.
EMBO J 26:481-93 -
Dassa B, Amitai G, Caspi J, Schueler-Furman O, Pietrokovski S (2007)
Trans protein splicing of cyanobacterial split inteins in endogenous and exogenous combinations.
Biochemistry 46:322-30 -
Dantas G, Corrent C, Reichow SL, Havranek JJ, Eletr ZM, Isern NG, Kuhlman B, Varani G, Merritt EA, Baker D (2007)
High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design.
J Mol Biol 366:1209-21 -
Wollacott AM, Zanghellini A, Murphy P, Baker D (2007)
Prediction of structures of multidomain proteins from structures of the individual domains.
Protein Sci 16:165-75 -
Zanghellini A, Jiang L, Wollacott AM, Cheng G, Meiler J, Althoff EA, Röthlisberger D, Baker D (2006)
New algorithms and an in silico benchmark for computational enzyme design.
Protein Sci 15:2785-94