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Daily MD, Masica D, Sivasubramanian A, Somarouthu S, Gray JJ (2005)
CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock.
Schueler-Furman O, Wang C, Baker D (2005)
Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
Singh P, Mhaka AM, Christensen SB, Gray JJ, Denmeade SR, Isaacs JT (2005)
Applying linear interaction energy method for rational design of noncompetitive allosteric inhibitors of the sarco- and endoplasmic reticulum calcium-ATPase.
J Med Chem 48:3005-14
Wang C, Schueler-Furman O, Baker D (2005)
Improved side-chain modeling for protein-protein docking.
Protein Sci 14:1328-39
Meiler J, Baker D (2005)
The fumarate sensor DcuS: progress in rapid protein fold elucidation by combining protein structure prediction methods with NMR spectroscopy.
J Magn Reson 173:310-6
Leaver-Fay A, Kuhlman B, Snoeyink J (2005)
An adaptive dynamic programming algorithm for the side chain placement problem.
Pac Symp Biocomput :16-27
Misura KM, Baker D (2005)
Progress and challenges in high-resolution refinement of protein structure models.
Saunders CT, Baker D (2005)
Recapitulation of protein family divergence using flexible backbone protein design.
J Mol Biol 346:631-44
Jiang L, Kuhlman B, Kortemme T, Baker D (2005)
A "solvated rotamer" approach to modeling water-mediated hydrogen bonds at protein-protein interfaces.
Riffle M, Malmström L, Davis TN (2005)
The Yeast Resource Center Public Data Repository.
Nucleic Acids Res 33:D378-82