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Adams PD, Baker D, Brunger AT, Das R, DiMaio F, Read RJ, Richardson DC, Richardson JS, Terwilliger TC (2013)
Advances, interactions, and future developments in the CNS, Phenix, and Rosetta structural biology software systems.
Annu Rev Biophys 42:265-87 -
Leaver-Fay A, O'Meara MJ, Tyka M, Jacak R, Song Y, Kellogg EH, Thompson J, Davis IW, Pache RA, Lyskov S, Gray JJ, Kortemme T, Richardson JS, Havranek JJ, Snoeyink J, Baker D, Kuhlman B (2013)
Scientific benchmarks for guiding macromolecular energy function improvement.
Methods Enzymol 523:109-43 -
Ollikainen N, Smith CA, Fraser JS, Kortemme T (2013)
Flexible backbone sampling methods to model and design protein alternative conformations.
Methods Enzymol 523:61-85 -
Zhang J, Lewis SM, Kuhlman B, Lee AL (2013)
Supertertiary structure of the MAGUK core from PSD-95.
Structure 21:402-13 -
Chou FC, Sripakdeevong P, Dibrov SM, Hermann T, Das R (2013)
Correcting pervasive errors in RNA crystallography through enumerative structure prediction.
Nat Methods 10:74-6 -
Smith CA, Shi CA, Chroust MK, Bliska TE, Kelly MJ, Jacobson MP, Kortemme T (2013)
Design of a phosphorylatable PDZ domain with peptide-specific affinity changes.
Structure 21:54-64 -
Stranges PB, Kuhlman B (2013)
A comparison of successful and failed protein interface designs highlights the challenges of designing buried hydrogen bonds.
Protein Sci 22:74-82 -
Vargas E, Yarov-Yarovoy V, Khalili-Araghi F, Catterall WA, Klein ML, Tarek M, Lindahl E, Schulten K, Perozo E, Bezanilla F, Roux B (2012)
An emerging consensus on voltage-dependent gating from computational modeling and molecular dynamics simulations.
J Gen Physiol 140:587-94 -
Zhang JZ, Yarov-Yarovoy V, Scheuer T, Karbat I, Cohen L, Gordon D, Gurevitz M, Catterall WA (2012)
Mapping the interaction site for a β-scorpion toxin in the pore module of domain III of voltage-gated Na(+) channels.
J Biol Chem 287:30719-28 -
London N, Gulla S, Keating AE, Schueler-Furman O (2012)
In silico and in vitro elucidation of BH3 binding specificity toward Bcl-2.
Biochemistry 51:5841-50