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I installed Rosetta 3.13 in KISTI supercomputor 5 (Nurion) (https://www.ksc.re.kr/eng/index/main).
And, I ran the unit tests. It is showing 85% success rate.
Below is what I did and I have attached the relevant documents.
$ cd rosetta/main/source
$ module purge
$ module load craype-network-opa python/2.7.15 gcc/8.3.0 mvapich2/2.3.1 craype-mic-knl
I've currently installed rosetta3 on aws cloud vm under ubuntu OS (Ubuntu 20.04.2 LTS).
I try to use a protocol from Khersonsky et al. 2018 (PMID: 30270109).
In order to do so, a rosetta_scripts_jd3.default.linuxgccrelease file is needed.
However, I did not find such file under $ROSETTA/main/source/bin/
My rosetta version is: rosetta_src_2021.16.61629_bundle
I've compiled it with: ./scons.py -j8 mode=release bin
I just downloaded the 3.13 tarball (precompiled binaries) and when I extracted it, the directory structure says it's rosetta_bin_linux_2021.16.61629_bundle (the previous version). Additionally, the md5sum values for all of the tarballs also point to 2021.16.61629. Can you upload the 3.13 version?
The compiled downloads of pyrosetta from Rosetta commons* aren't '--serialization' builds.
* I was going to doublecheck but https://www.rosettacommons.org/software/license-and-download is giving me a 404 for PyRosetta.
Is there any disadavantage in this build one should be wary of? Like slower, segfault-y-er, lacking other features etc.
The fact that it is not one of the options makes me think there may be, hence my asking.
Hello, I am having trouble installing Rosetta 3.9 on my dual core Intel mac running MacOS Catalina. I am following the instructions from this website: https://new.rosettacommons.org/docs/latest/build_documentation/Build-Documentation
However, I am getting errors. May someone help me troubleshoot through this process? I have attached a text file with the commands I used and the errors I am getting.
Thank you in advance.
I am trying to compile rosetta_src_2021.16.61629_bundle.tgz and for this I follow the following steps:
- tar -xvzf rosetta_src_2021.16.61629_bundle.tgz
- cd rosetta_src_2021.16.61629_bundle / main / source /
- ./scons.py -j6 bin mode = release> salida.txt
We just compiled opencl version of rosetta. But when I run rosetta_scripts.opencl.linuxgccrelease, there is no running processes found in GPU. I am just wondering if GPU is supported after opencl version is successfully compiled. Thanks.