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Trouble installing Rosetta 3.9 on MacOS Catalina

Category: 
Compilation

Hello, I am having trouble installing Rosetta 3.9 on my dual core Intel mac running MacOS Catalina. I am following the instructions from this website: https://new.rosettacommons.org/docs/latest/build_documentation/Build-Documentation

However, I am getting errors. May someone help me troubleshoot through this process? I have attached a text file with the commands I used and the errors I am getting.

Thank you in advance.

Johnny

Post Situation: 

The /main/source/bin directory is not created

Category: 
Compilation

Hello,

I am trying to compile rosetta_src_2021.16.61629_bundle.tgz and for this I follow the following steps:

  • tar -xvzf rosetta_src_2021.16.61629_bundle.tgz
  • cd rosetta_src_2021.16.61629_bundle / main / source /
  • ./scons.py -j6 bin mode = release> salida.txt

 

Post Situation: 

opencl support programs

Category: 
Compilation

Hi, All:

        We just compiled opencl version of rosetta. But when I run rosetta_scripts.opencl.linuxgccrelease, there is no running processes found in GPU. I am just wondering if GPU is supported after opencl version is successfully compiled. Thanks.

Best,

 

Post Situation: 

arm64 processor is not supported for new M1 chip

Category: 
Compilation

Hello,

I'm fairly new to dealing with these kinds of software installation and compilation. I want to download the latest release of rosetta on my M1 Macbook air laptop and I've run into the following problem when I try to compile the rosetta bundle in the Rosetta/main/source directory:

source % ./scons.py -j6 mode=release bin

scons: Reading SConscript files ...

Traceback (most recent call last):

  File "/Users/martinfe/Rosetta/main/source/SConstruct", line 183, in main

Post Situation: 

error in installing rosetta for use in phenix

Category: 
Compilation

Hi everybody!

I'm trying to install Rosetta (version 3.10) for use in Phenix on Ubuntu 20. No problem with Phenix installation, but when I run "rosetta.build_phenix_interface nproc=2" I got the following:

Substituting phenix.python into build shell scripts
  update_options.sh
  update_ResidueType_enum_files.sh

  Phenix modules found : /home/stefano/programmi/phenix-1.19.1-4122/modules/phenix
False
/home/stefano/programmi/rosetta/rosetta_src_2018.33.60351_bundle/main/source

Post Situation: 

error in installing rosetta for use in phenix

Category: 
Compilation

Hi everybody!

I'm trying to install Rosetta (version 3.10) for use in Phenix on Ubuntu 20. No problem with Phenix installation, but when I run "rosetta.build_phenix_interface nproc=2" I got the following:

Substituting phenix.python into build shell scripts
  update_options.sh
  update_ResidueType_enum_files.sh

  Phenix modules found : /home/stefano/programmi/phenix-1.19.1-4122/modules/phenix
False
/home/stefano/programmi/rosetta/rosetta_src_2018.33.60351_bundle/main/source

Post Situation: 

An error occurred during the installation

Category: 
Compilation

Dear Rosetta Users,

I recentlly downloaded the src version of rosetta 2020.50 and compiled it with scons.py, but there was an error. It seems that the program was pointing towards a wrong directory (the bin version directory) for the generate_database_cache application. I'm attaching the log file. Thank you in advance!

Post Situation: 

slurm not availble

Category: 
Compilation

Good afternoon,

I am attemtpting to compile according to item 1.5.1 at https://csrosetta.chemistry.ucsc.edu/node/1354...

$ module load   python/2.7 slurm openmpi/gcc/64

however slurm is not available. The cluster uses PBSPro. Can anyone suggest a work-around?

Thanks - Dave Morgan Ph.D., Colbert Lab, NDSU 

Post Situation: 

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