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Compilation and unit test failures

Category: 
Compilation

Hi all,

I installed Rosetta 3.13 in KISTI supercomputor 5 (Nurion) (https://www.ksc.re.kr/eng/index/main).

And, I ran the unit tests. It is showing 85% success rate. 

Below is what I did and I have attached the relevant documents.

$ cd rosetta/main/source

$ module purge

$ module load craype-network-opa python/2.7.15 gcc/8.3.0 mvapich2/2.3.1 craype-mic-knl

Post Situation: 

Compiling rosetta to include rosetta_scripts_jd3

Category: 
Compilation

Hi,

I've currently installed rosetta3 on aws cloud vm under ubuntu OS (Ubuntu 20.04.2 LTS).

I try to use a protocol from Khersonsky et al. 2018 (PMID: 30270109).
In order to do so, a  rosetta_scripts_jd3.default.linuxgccrelease   file is needed.
However, I did not find such file under $ROSETTA/main/source/bin/ 


My rosetta version is: rosetta_src_2021.16.61629_bundle
I've compiled it with: ./scons.py -j8 mode=release bin

Post Situation: 

tarball not correct for 3.13

Category: 
Compilation

Hi,

I just downloaded the 3.13 tarball (precompiled binaries) and when I extracted it, the directory structure says it's rosetta_bin_linux_2021.16.61629_bundle (the previous version).  Additionally, the md5sum values for all of the tarballs also point to 2021.16.61629.  Can you upload the 3.13 version? 

Best,

Ken

Post Situation: 

Cereal

Category: 
Compilation

The compiled downloads of pyrosetta from Rosetta commons* aren't '--serialization' builds.

* I was going to doublecheck but https://www.rosettacommons.org/software/license-and-download is giving me a 404 for PyRosetta.

Is there any disadavantage in this build one should be wary of? Like slower, segfault-y-er, lacking other features etc. 
The fact that it is not one of the options makes me think there may be, hence my asking.

Post Situation: 

Trouble installing Rosetta 3.9 on MacOS Catalina

Category: 
Compilation

Hello, I am having trouble installing Rosetta 3.9 on my dual core Intel mac running MacOS Catalina. I am following the instructions from this website: https://new.rosettacommons.org/docs/latest/build_documentation/Build-Documentation

However, I am getting errors. May someone help me troubleshoot through this process? I have attached a text file with the commands I used and the errors I am getting.

Thank you in advance.

Johnny

Post Situation: 

The /main/source/bin directory is not created

Category: 
Compilation

Hello,

I am trying to compile rosetta_src_2021.16.61629_bundle.tgz and for this I follow the following steps:

  • tar -xvzf rosetta_src_2021.16.61629_bundle.tgz
  • cd rosetta_src_2021.16.61629_bundle / main / source /
  • ./scons.py -j6 bin mode = release> salida.txt

 

Post Situation: 

opencl support programs

Category: 
Compilation

Hi, All:

        We just compiled opencl version of rosetta. But when I run rosetta_scripts.opencl.linuxgccrelease, there is no running processes found in GPU. I am just wondering if GPU is supported after opencl version is successfully compiled. Thanks.

Best,

 

Post Situation: 

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