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Compilation

error with extend_terminus.py

Category: 
Compilation
Structure prediction

Hi all

I try to run the script extend_terminus.py with the following command :

python extend_terminus.2.py -c A -o 1.c.pdb -a 1.clean.pdb AAGAAGAGAG

and i end up with the following error

pack_rotamers = rosetta.protocols.simple_moves.PackRotamersMover(sfxn, task)
AttributeError: 'module' object has no attribute 'PackRotamersMover'

Does anyone know how to fix that ?

Cheers

JM

Post Situation: 

free up space after building rosetta

Category: 
Compilation

Hi eveyone,

I built Rosetta on a linux machine and it takes up 24G of space. However, I'd like to remove extra parts (like demos or pilot apps) or in any other way, reduce this space.

Is there any solution for this? Is it possible to keep the shared libraries and .so files and remove all the codes?

Thanks a lot in advance,

Hamed

Post Situation: 

ubuntu 16.04 install

Category: 
Compilation

Do I assume correctly in a 8 core hyperthreaded machine openmpi runs will be faster than normal static compilations? Has anyone managed to compile  the openmpi version on ubuntu 16.04?   I did have to edit the tools/build/options.settings and add 5.4 otherwise scons wont run.  I assume that the compiler is too new for this? Any work around? Thanks

PS:My tools/build/site.settings is empty

Post Situation: 

Rosetta on CentOS 7 using GCC-5.5

Category: 
Compilation

Hello

I am trying to compile rosetta_src_2017.45.59812 using gcc-5.5 on a centos machine.

First of all,

./rosetta_compiler_test.py /home/ertinaz/gcc-install/gcc-5.5.0/bin/g++-5.5

gives

Summary:
Main Tests:             	16 of 16 passed
Optional Tests:         	5 of 6 passed

REGEX:                  	<<<FAILED! (Compiled but did not run.)>>>

First question is which gcc version would pass the entire test?

Post Situation: 

FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py

Category: 
Compilation

Dears,

After installing Rosetta 3.9 in a cluster and trying to run the simple command:

helix_preassemble_setup.py -fasta NFKB_1OOA_RNAStructure_2D.fasta -secstruct NFKB_1OOA_RNAStructure.secstruct

we get the following error:

Post Situation: 

FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py

Category: 
Compilation

Dears,

After installing Rosetta 3.9 in a cluster and trying to run the simple command:

helix_preassemble_setup.py -fasta NFKB_1OOA_RNAStructure_2D.fasta -secstruct NFKB_1OOA_RNAStructure.secstruct

we get the following error:

Post Situation: 

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