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Compilation

PyRosetta compiled with GLIBC 2.12

Category: 
Compilation
PyRosetta

Hello,

We are trying to install PyRosetta on CentOS 6.  The current compilation of PyRosetta (PyRosetta4.Release.python27.linux.release-171.tar.bz2) requires GLIBC_2.14.

However, our system's GLIBC version is 2.12 and the compilation of PyRosetta stop with the error

                          ImportError: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by /cm/shared/apps/pyrosetta/python/2.7/4.171/lib/python2.7/site-packages/pyrosetta-2018.9+release.333d996-py2.7-linux-x86_64.egg/pyrosetta/rosetta.so)

Post Situation: 

rosetta_mpi error

Category: 
Compilation

Hello!

I'd compiled rosetta using using extra=mpi and it was successful (no errors). moreover, I already have rosetta running without mpi options. 

when i am trying to run any application (let say abinitio) it pop up an error " AbinitioRelax.mpi.linuxgccrelease: error while loading shared libraries: libcppdb.so: cannot open shared object file: No such file or directory"

Post Situation: 

Only Link to executables in bin

Category: 
Compilation

Hi

Im new to Ubuntu and Rosetta. Installed Rosetta as per the guildelines and released bin by

./scons.py -j2 mode=release

But the bin only contains link to executables and hence when I try to run the De novo structure prediction tutorials, getting error message,

AbinitioRelax.default.linuxgccrelease: No such file or directory

can you please help.

Many thanks

Siaseb
 

Post Situation: 

test unit error cxxtestgen.py TabError: inconsistent use of tabs and spaces in indentation

Category: 
Compilation

Hi,

I  sucessufully compiled release and debug libraries and excecutables. However,  when I get an error message for test units.  This is my log:

 

/scons.py mode=debug cat=test -j2

Post Situation: 

Rosetta compilation on Linux Ubuntu

Category: 
Compilation

Hi everyone,

I downloaded the rosetta package for linux (version 3.8). During the compilation I receive an error saying: 

UnicodeDecodeError: 'ascii' codec can't decode byte 0xc3 in position 102: ordinal not in range(128)
scons: building terminated because of errors.

Can someone help me to resolve this problem. Thank you.

Post Situation: 

Error in units test

Category: 
Compilation

I have recently installed Rosetta by compiling from source code. After that, I moved to testing as described here.

$ cd Rosetta/main/source
$ ./scons.py -j4 mode=debug && ./scons.py -j4 mode=debug cat=test
.
(omitted)
.
scons: done building targets.

The commands above seem fine, but when I tried to run unit tests, I got the following error.

Post Situation: 

move to high performance computer

Category: 
Compilation

 

I compiled Rosetta in my local computer successfully and It can runs.

I just upload the local compiled Rosetta to server, When I run the H3-modeling in log file I got error " ~/rosetta/main/source/bin/antibody_H3.linuxclangrelease: error while loading shared libraries: libcppdb.so: cannot open shared object file: No such file or directory"

Do I need to compile again in server?

Post Situation: 

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