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Problems with output control

Category: 
Compilation

Dear all,

I am new to rosetta. I am studying the Rosetta tutorials and I am there is a problem with output path control. I followed the tutorial 4 (controlling input and output) and type the following command in the section "Setting output paths" of this tutorial into my CentOS 7 linux shell:

$> $ROSETTA3/bin/score_jd2.default.linuxgccrelease -in:file:s input_files/1qys.pdb -out:pdb -out:path output_files

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Rosetta build error on MacOS Sierra

Category: 
Compilation

Hello everyone!

I am trying to build rosetta with mpi in macOS sierra. But, it gives the following errors. 

I tried rebuilding without mpi (after deleting build/ contents), but it gives the same error.

Could any one please help?

$ sudo ./scons.py -j 3 mode=release bin extras=mpi

1 error generated.

scons: *** [build/src/release/macos/16.0/64/x86/clang/8.1/mpi/protocols/init/init.os] Error 1

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Build with mpi error

Category: 
Compilation

Hello everyone!

I am trying to install rosetta with mpi on CentOS 6.9. I installed openmpi and openmpi-devel using yum. I copied the file site.settings.topsail as site.settings and run the command './scons.py bin mode=release extras=mpi -j5'

I am getting the following error.

 

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Rosetta 3.8 GPU compilation

Category: 
Compilation

Hello,

I am having an error while compiling Rosetta with GPU options. I am using the following command to build Rosetta 3.8 with opencl GPU options:

scons mode=release extras=opencl bin

The log produced during the building of executables is as follows:

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rosetta compile

Category: 
Compilation

Hi, I am beginner using rosetta, I used Scons to compile rosetta code and it is successful. I used Anjuta(IDE) to compile AbinitioRelax.cc and generated an AbinitioRelax.o file,when i used g++ to Compile it into executable file, it return the wrong information, as follows:

root@ma:/home/ma/rosetta/main/source/src/apps/public# g++ AbinitioRelax.o

AbinitioRelax.o: In function `main':

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main/source/external/boost_1_55_0/boost/bimap/tags/ being ignored by git

Category: 
Compilation

Hi,

I'm using git for version control while developing some additional score terms for internal use. We are not official developers, so I can't clone the official repo, so I just downloaded the source I need (2017.08), and ran the following to get a starting point for my development:

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Error with DisjointSets while compiling Rosetta 3.8 using scons

Category: 
Compilation

We have been working with rosetta 2016.32 for a while, which compiles just fine. recently we decided to upgrade to the 3.8 release (2017.08). compiling with 'scons mode=release' reuslts in the following error trace:

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Rosetta_2016.32.58837-openmpi-1.10.2-gcc-6.1.0 compile errors

Category: 
Compilation

Hi, 

Im trying to cmpile Rosetta 3.7 with openmpi and getting the following errors. Please help.

Environmet: Centos 7.3 

Modules loaded : GCC/6.1.0, openmpi/1.10.2

mpicc --version
gcc (GCC) 6.1.0
######################################################################################################

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