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Rosetta on CentOS 7 using GCC-5.5

Submitted by fertinaz on Wed, 2018-05-02 14:14
Category: 
Compilation

Hello

I am trying to compile rosetta_src_2017.45.59812 using gcc-5.5 on a centos machine.

First of all, 

./rosetta_compiler_test.py /home/ertinaz/gcc-install/gcc-5.5.0/bin/g++-5.5

gives 

Summary:
Main Tests:             	16 of 16 passed
Optional Tests:         	5 of 6 passed

REGEX:                  	<<<FAILED! (Compiled but did not run.)>>>

First question is which gcc version would pass the entire test?

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Rosetta 3 - Build/Install

FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py

Submitted by obdulia on Thu, 2018-04-19 12:05
Category: 
Compilation

Dears,

After installing Rosetta 3.9 in a cluster and trying to run the simple command:

helix_preassemble_setup.py -fasta NFKB_1OOA_RNAStructure_2D.fasta -secstruct NFKB_1OOA_RNAStructure.secstruct

we get the following error:

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Rosetta 3 - Build/Install

FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py

Submitted by obdulia on Thu, 2018-04-19 12:03
Category: 
Compilation

Dears,

After installing Rosetta 3.9 in a cluster and trying to run the simple command:

helix_preassemble_setup.py -fasta NFKB_1OOA_RNAStructure_2D.fasta -secstruct NFKB_1OOA_RNAStructure.secstruct

we get the following error:

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Rosetta 3 - Build/Install

PyRosetta compiled with GLIBC 2.12

Submitted by santanajuan on Tue, 2018-03-13 15:02
Category: 
Compilation
PyRosetta

Hello,

We are trying to install PyRosetta on CentOS 6.  The current compilation of PyRosetta (PyRosetta4.Release.python27.linux.release-171.tar.bz2) requires GLIBC_2.14.

However, our system's GLIBC version is 2.12 and the compilation of PyRosetta stop with the error

                          ImportError: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by /cm/shared/apps/pyrosetta/python/2.7/4.171/lib/python2.7/site-packages/pyrosetta-2018.9+release.333d996-py2.7-linux-x86_64.egg/pyrosetta/rosetta.so)

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PyRosetta - Build/Install

rosetta_mpi error

Submitted by malkeet.singh on Mon, 2018-02-05 10:29
Category: 
Compilation

Hello!

I'd compiled rosetta using using extra=mpi and it was successful (no errors). moreover, I already have rosetta running without mpi options. 

when i am trying to run any application (let say abinitio) it pop up an error " AbinitioRelax.mpi.linuxgccrelease: error while loading shared libraries: libcppdb.so: cannot open shared object file: No such file or directory"

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Rosetta 3 - Build/Install

Only Link to executables in bin

Submitted by Siaseb on Tue, 2018-01-09 08:36
Category: 
Compilation

Hi

Im new to Ubuntu and Rosetta. Installed Rosetta as per the guildelines and released bin by

./scons.py -j2 mode=release

But the bin only contains link to executables and hence when I try to run the De novo structure prediction tutorials, getting error message,

AbinitioRelax.default.linuxgccrelease: No such file or directory

can you please help.

Many thanks

Siaseb
 

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Rosetta 3 - Build/Install

test unit error cxxtestgen.py TabError: inconsistent use of tabs and spaces in indentation

Submitted by chemaniac on Thu, 2018-01-04 23:21
Category: 
Compilation

Hi,

I  sucessufully compiled release and debug libraries and excecutables. However,  when I get an error message for test units.  This is my log:

 

/scons.py mode=debug cat=test -j2

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