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Rosetta compilation on Linux Ubuntu

Submitted by medreda on Mon, 2017-12-11 13:54
Category: 
Compilation

Hi everyone,

I downloaded the rosetta package for linux (version 3.8). During the compilation I receive an error saying: 

UnicodeDecodeError: 'ascii' codec can't decode byte 0xc3 in position 102: ordinal not in range(128)
scons: building terminated because of errors.

Can someone help me to resolve this problem. Thank you.

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Rosetta 3 - Build/Install

Error in units test

Submitted by nukaemon on Wed, 2017-11-08 19:15
Category: 
Compilation

I have recently installed Rosetta by compiling from source code. After that, I moved to testing as described here. 

$ cd Rosetta/main/source
$ ./scons.py -j4 mode=debug && ./scons.py -j4 mode=debug cat=test
.
(omitted)
.
scons: done building targets.

The commands above seem fine, but when I tried to run unit tests, I got the following error.

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Rosetta 3 - Build/Install

move to high performance computer

Submitted by jessye on Wed, 2017-11-08 02:28
Category: 
Compilation

 

I compiled Rosetta in my local computer successfully and It can runs.

I just upload the local compiled Rosetta to server, When I run the H3-modeling in log file I got error " ~/rosetta/main/source/bin/antibody_H3.linuxclangrelease: error while loading shared libraries: libcppdb.so: cannot open shared object file: No such file or directory"

Do I need to compile again in server?

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Rosetta 3 - Build/Install

errors during test rosetta_2017.39.59729

Submitted by Jacky010 on Mon, 2017-10-30 23:01
Category: 
Compilation

I have compiled the newest version of rosetta3 in centos7 without any problem. After installation, I was testing the rosetta. Some errors occur. Could any one give me some suggestions?

Thank you for taking your time.

I have attached the test.log below.

 

 

 

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Rosetta 3 - Build/Install

Error compiling pyrosetta

Submitted by SenyorDrew on Fri, 2017-10-27 10:18
Category: 
Compilation

Hi,

I'm running into an issue when trying to compile pyrosetta from source.  I'm following these directions:

http://www.pyrosetta.org/documentation#TOC-Building-PyRosetta-from-source

Those directions worked for me when I was using rosetta3.8.

I recently downloaded rosetta_src_2017.39.59729_bundle and get this issue:

>pwd

/opt/software/rosetta/rosetta_src_2017.39.59729_bundle/main/source/src/python/PyRosetta

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PyRosetta - Build/Install

Deleting ones "own" guest job a to reduce server load

Submitted by Protein fan on Thu, 2017-10-26 01:26
Category: 
Compilation

Hi!

First, I want to thank you for giving us allowance to run  your excelent scientific codes on  the servers you provide. I also apologize if this is off-topic, but i was wondering if a guest could remove erroranous submissions before they are started? This is happenned recently and we dont wish to overload your servers.

 

Bests

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ROSIE - General

compilation rosetta in ubuntu 16.04, please help

Submitted by jessye on Sun, 2017-10-15 20:21
Category: 
Compilation

Anyone use unbuntu 16.04?

I installed  gcc-6 , g++6,  scons-2.51.  all install correctly. as I checked -- version all correct.

 

option1, when I compile the Roseta source code ( Version 3.8)

$ ./scons.py -j 4 mode=release bin

The program runs long time. but at the last I got

usr/bin/ld: cannot find -lz

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Rosetta 3 - Build/Install

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