You are here

Compilation

errors during test rosetta_2017.39.59729

Category: 
Compilation

I have compiled the newest version of rosetta3 in centos7 without any problem. After installation, I was testing the rosetta. Some errors occur. Could any one give me some suggestions?

Thank you for taking your time.

I have attached the test.log below.

 

 

 

Post Situation: 

Error compiling pyrosetta

Category: 
Compilation

Hi,

I'm running into an issue when trying to compile pyrosetta from source.  I'm following these directions:

http://www.pyrosetta.org/documentation#TOC-Building-PyRosetta-from-source

Those directions worked for me when I was using rosetta3.8.

I recently downloaded rosetta_src_2017.39.59729_bundle and get this issue:

>pwd

/opt/software/rosetta/rosetta_src_2017.39.59729_bundle/main/source/src/python/PyRosetta

Post Situation: 

Deleting ones "own" guest job a to reduce server load

Category: 
Compilation

Hi!

First, I want to thank you for giving us allowance to run  your excelent scientific codes on  the servers you provide. I also apologize if this is off-topic, but i was wondering if a guest could remove erroranous submissions before they are started? This is happenned recently and we dont wish to overload your servers.

 

Bests

Post Situation: 

compilation rosetta in ubuntu 16.04, please help

Category: 
Compilation

Anyone use unbuntu 16.04?

I installed  gcc-6 , g++6,  scons-2.51.  all install correctly. as I checked -- version all correct.

 

option1, when I compile the Roseta source code ( Version 3.8)

$ ./scons.py -j 4 mode=release bin

The program runs long time. but at the last I got

usr/bin/ld: cannot find -lz

Post Situation: 

How to read the output score file from rosetta?

Category: 
Compilation

Dear all, 

I find the score file output by rosetta is different to read. For example, a score-snugdock.sf file produced by snugdock reads like the following in gedit:

https://www.dropbox.com/s/6oba8nitiwob7pb/score.PNG?dl=0

I cannot tell the column names and their corresponding values. The Rosetta documnet gives a sort command that can pick out the structure with the lowest score:

 sort -nk5 score-snugdock.sf | head -n1 | awk '{print $NF}'

Post Situation: 

libmpc.so.2: cannot open shared object file

Category: 
Compilation

I am attempting to install Rosetta/3.8 on a Linux Cluster running Redhat 5.6. I am compiling with gcc/4.9.3 and mpich 3.2. I have come across the following error:

/exports/apps/gcc/4.9.3/libexec/gcc/x86_64-unknown-linux-gnu/4.9.3/cc1plus: error while loading shared libraries: libmpc.so.2: cannot open shared object file: No such file or directory

Post Situation: 

Running snugdock was crashed by "segmentation fault"

Category: 
Compilation

Hello everyone,

When using the following command to run snugdock in my centos 7 system:

 snugdock.linuxgccrelease -s antibody_antigen_start.prepack_new.pdb \
     -ensemble1 antibody_ensemble.list \
    -ensemble2 antigen_ensemble.list \
    -detect_disulf false \
    -antibody:auto_generate_kink_constraint \
    -antibody:all_atom_mode_kink_constraint \
    -nstruct 20 \
   -multiple_processes_writing_to_one_directory > snugdock.log 2>&1 &

Post Situation: 

Pages

Subscribe to RSS - Compilation