Compilation

Dear all, 

I find the score file output by rosetta is different to read. For example, a score-snugdock.sf file produced by snugdock reads like the following in gedit:

https://www.dropbox.com/s/6oba8nitiwob7pb/score.PNG?dl=0

I cannot tell the column names and their corresponding values. The Rosetta documnet gives a sort command that can pick out the structure with the lowest score:

 sort -nk5 score-snugdock.sf | head -n1 | awk '{print $NF}'

Hello everyone,

When using the following command to run snugdock in my centos 7 system:

 snugdock.linuxgccrelease -s antibody_antigen_start.prepack_new.pdb \
     -ensemble1 antibody_ensemble.list \
    -ensemble2 antigen_ensemble.list \
    -detect_disulf false \
    -antibody:auto_generate_kink_constraint \
    -antibody:all_atom_mode_kink_constraint \
    -nstruct 20 \
   -multiple_processes_writing_to_one_directory > snugdock.log 2>&1 &

Dear all,

I have been trying to compile rosetta 3.8 for a while now without success (meathod worked will with 3.7). I have a 17.04 Ubuntu Gnome Operating System.

Compile Commands:

sudo apt install zlib1g-dev scons build-essential -y
tar -xvzf rosetta_src_3.8_bundle.tgz
cd {ROSETTA}/main/source
./scons.py mode=release bin

Result:

Successfully compiles everything, no errors printed.

Dear all,

The "How To Read These Tutorials" section (https://www.rosettacommons.org/demos/latest/tutorials/How_To_Read_These_Tutorials/Tutorial_Setup) of the tutorial of Rosetta  requires the following environment variables are set: 

env $ROSETTA3=the path to your Rosetta/source directory