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Compilation

Correctly Formatting a PDB file for analysis of a Zinc Finger Motif

Category: 
Compilation

I have been trying to correctly format a zinc finger motif for docking in RosettaDock-3.2, but have apparently failed after many efforts.  I have attached the PDB file.  The zinc is located within Chain A and coordinated by residues within Chain A.

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please help in compliation Rosetta on Ubuntu 20.04, extras=hdf5!

Category: 
Compilation

hello,everyone! I ran into a problem when I complied rosetta with option "extras=hdf5". I have installed hdf5 in /usr/local/hdf5,  and I have add it to environmental variables.

command line: ./scons.py -j16 bin mode=release extras=hdf5

results:

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Error in compiling rosetta.source.release-296 and 314, with MPI 4.1.3 and gcc 8.3.1

Category: 
Compilation

Hi all, 

I'm trying to build Rosetta (rosetta.source.release-296 and 314) in CentOS 7 in Virtual Machine (VM) with MPI 4.1.3 and gcc 8.3.1. This is the first time that I try to compile Rosetta in a VM.

The command line is as below:

./scons.py mode=release bin extras=mpi

After several minutes, I have the following error message:

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abinitio demo is not progressing - new install

Category: 
Compilation

Hey, I am a relatively new user and my University recently got an academic license and installed Rosetta on our high performance computing for my PhD in de novo design after requesting. I am trying to run the abinitio demo contained within "/rosetta/3.13/gcc-9.3.0+openmpi-4.0.4/rosetta_src_2021.16.61629_bundle/main/demos/public/abinitio" but I am running into a strange error.

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Building v3.13 rosetta.source.release-296 + MPI error

Category: 
Compilation

Hi all,

I'm trying to build Rosetta version 3.13 (rosetta.source.release-296) in a CentOS cluster with MPI. I have already installed version 3.7, 3.10 and 3.12 in the same machine. I'm using the very same options as used in older compiled versions (file site.settings indicating where are de mpicc and mpicxx compilers/libraries).

The command line is as below:

./scons.py mode=release bin extras=mpi 

After several minutes, I have the following error message:

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