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ERROR: ResidueType::add_ring: Requested atoms don't exist in this ResidueType!

Submitted by walidabualafia on Thu, 2023-07-20 09:44
Category: 
Compilation

Hi, all,

I am currently trying to run Rifdock, which I compiled according to the instructions in this repo (https://github.com/rifdock/rifdock). However, everytime I pass it a *.pdb input file, I get the following error:

=================================================== preparing target ===================================================

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Rosetta 3 - Applications

Compilation and Setting up Rosetta

Submitted by Pj on Fri, 2023-06-09 21:38
Category: 
Compilation

Hello, I have had some problems with the compilation of Rosetta. I'm using Ubuntu 22.04.2 LTS. For compilation I used the release mode.

When I type: ./scons.py -j1 mode=release bin (OR) ./scons.py mode=release bin, I'm getting the following error:

 scons: Reading SConscript files ...

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Rosetta 3 - Build/Install

Fork Rosetta for commercial license

Submitted by Pilyam on Mon, 2023-04-03 08:40
Category: 
Compilation

Hello,

My name is Or and I'm new to this forum so I appologise if my query is trivial or if this is not the right sub forum or category.

I work as a software developer at a company that uses Rosetta, we have a commertial licence. Sometimes, we change the CPP code, for example to add a new mover. 

We wish to create an inner github repo of Rosetta to keep track of our own changes.

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Rosetta 3 - Build/Install

Error compiling in old macOS El Capitan 10.11.6

Submitted by dfcoelho on Wed, 2023-03-29 09:59
Category: 
Compilation

Hi all,

I am trying to compile Rosetta-334 week 45, year 2022 in my old friend Mac Mini with macOS 10.11.6 El Capitan.

I am using the standard command line: 

./scons.py bin mode=release -j4

After a few second I've got the following error:

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Rosetta 3 - Build/Install

nvc++ error when compiling Rosetta for MPI on a supercomputer

Submitted by u.upadhyay on Wed, 2023-03-15 05:02
Category: 
Compilation

Hello everyone,

I have been working with Rosetta for the past year. I have installed and used it on multiple systems but recently I wanted to generate mass structures for many sequences. I got access to a supercomputer and want to use Rosetta, but I have been facing this problem where compilation with MPI support fails and gives an error for which I couldn't find a solution anywhere with a simple web search. 

If anyone else has faced this problem, I would really appreciate any help. Thanks.

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Rosetta 3 - Build/Install

scons: *** [build/src/release/linux/3.10/64/x86/gcc/8.5/mpi/mp_range_relax.mpi.linuxgccrelease] Error 1

Submitted by ldx022 on Sat, 2023-03-11 01:40
Category: 
Compilation

Hi there,

An attempt to compile rosetta using a later version of gcc (8.5.0) failed during compilation.(Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting. | RosettaCommons)

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Rosetta 3 - Build/Install

RuntimeError: CUDA out of memory.

Submitted by ravi.thakkar on Tue, 2023-03-07 00:27
Category: 
Compilation

I am having an error while running RFDiffusion.

I don't know where is the 

RuntimeError: CUDA out of memory. Tried to allocate 60.00 MiB (GPU 0; 1.95 GiB total capacity; 931.08 MiB already allocated; 25.00 MiB free; 984.00 MiB reserved in total by PyTorch)

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Rosetta 3 - General

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