You are here

Home

Compilation

Error in Ubuntu 20.10

Submitted by jpfuenzalidawx on Tue, 2021-01-12 13:38
Category: 
Compilation

Hi, sorry for disturbing you but  I have problems installing Rosetta.  In Ubuntu 20.10.

I have also tried with clans, but it did not work.  I follow all the classical error list, but still no success. Also I am not sure what is the error. 

Could someone help me, please?

regards

JP

Post Situation: 
Unsolved
Forums: 
Rosetta 3 - Build/Install

Error compiling mpi under Big Sur

Submitted by amorin on Tue, 2020-12-29 11:06
Category: 
Compilation

Using updated Xcode and a fresh install of macos Big Sur, I get the following error (below) when compiling using: "./scons.py -j 12 mode=release bin extras=mpi"

 Open-mpi is installed (via homebrew) and if I run "ompi_info" all the info seems correct (see atached .txt). Any suggestions would be appreacited. Thanks!

-Andrew

 

Post Situation: 
Unsolved
Forums: 
Rosetta 3 - Build/Install

Build Error on macOS Big Sur

Submitted by s91moghadami on Mon, 2020-11-16 13:56
Category: 
Compilation

Hi,

I am trying to build rosetta 3.12 on macOS Big Sur but I receive the following error:

-----------------------------------------------------------------------------------------------------------------------

In file included from src/apps/public/AbinitioRelax.cc:20:

In file included from src/basic/options/option.hh:17:

In file included from src/utility/options/OptionCollection.hh:21:

Post Situation: 
Unsolved
Forums: 
Rosetta 3 - Build/Install

helical bundle predict

Submitted by ii_cnr on Fri, 2020-11-13 09:53
Category: 
Compilation
Structure prediction

Hi everyone,

I'm interested in using the helical_bundle_predict method. In this link (https://www.rosettacommons.org/docs/latest/structure_prediction/helical-bundle-predict) it is described as an application but I cannot understand how to make the system install it. It may have something to do with the fact that it is a pilot application, but still it is not clear to me which files I need to modify in order to install it with scons. 

Post Situation: 
Unsolved
Forums: 
Rosetta 3 - Build/Install

Error on rna_denovo_setup.py

Submitted by zahra_AZ on Mon, 2020-11-09 02:23
Category: 
Compilation

Dear all,

I got this error when I want to use the rna_denovo_setup.py 

>~/tools/rna_tools/bin/rna_denovo_setup.py -fasta fasta -secstruct_file secstruct -no_minimize -tag glycine_riboswitch -working_res 1-159 -native 3p49_native_RNA.pdb -cst_file constraints -staged_constraints -cycles 20000 -ignore_zero_occupancy false -silent helix0.out helix1.out helix2.out helix3.out helix4.out helix5.out helix6.out helix7.out -input_silent_res 2-9 65-72 16-21 26-31 33-35 54-56 39-42 48-51 81-85 155-159 92-97 101-106 108-110 145-147 114-117 139-142

Post Situation: 
Unsolved
Forums: 
Rosetta 3 - General

Unable to successfully compile using Ubuntu 18.04.5 LTS

Submitted by ampperez on Wed, 2020-10-21 09:30
Category: 
Compilation

Hello,

I am currently unable to correclty compile Rossetta in a Ubuntu 18.04.5 LTS system.

The version I am currently using is Rosetta 3.12.

Then try to compile using with the following...

./scons.py -j 4 mode=release bin

The following terminal output and error are given:

Post Situation: 
Unsolved
Forums: 
Rosetta 3 - Build/Install

pepspec anchor dock

Submitted by Astghik on Tue, 2020-10-20 05:31
Category: 
Compilation

I type the following command :

/Users/andreserobian/rosetta_workshop/rosetta/main/source/build/src/release/macos/10.14/64/x86/clang/10.0/default/pepspec_anchor_dock.default.macosclangrelease @dock.args -corrections::restore_talaris_behavior

 

 And I get this error:

[FILE]: src/apps/public/pepspec/pepspec_anchor_dock.cc
[LINE]: 500
[START_MESSAGE]
[ ERROR ] UtilityExitException
ERROR: no ref pdbs loaded!

Post Situation: 
Unsolved
Forums: 
Rosetta 3 - Applications

Unable to successfully compile using ubuntu virtual machine

Submitted by leo1990 on Mon, 2020-10-12 21:30
Category: 
Compilation

Hello, I am currently unable to correclty compile. I am running a ubuntu virtual machine on win10 (ubuntu 14.04 LTS, GCC version 4.8.4). 

The version I am currently using is Rosetta 3.12.

Then try to compile using with the following...

./scons.py mode=release bin

The following error is given

Post Situation: 
Unsolved
Forums: 
Rosetta 3 - Build/Install

Unable to successfully compile using Mac Catalina 10.15.7

Submitted by Cyrrusm on Tue, 2020-10-06 11:23
Category: 
Compilation

Hello, I am currently unable to correclty compile. I am running a macOS Catalina 10.15.7. 

The version I am currently using is Rosetta 3.12 with Mac binaries

I am able to unzip the file and go into the source folder with the following input:

cd Desktop/Rosetta/main/source/

Then try to compile using with the following...

./scons.py -j3 mode=release bin

The following error is given

Post Situation: 
Unsolved
Forums: 
Rosetta 3 - Build/Install

Pages

Subscribe to RSS - Compilation