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Transitioning from ROSIE to Rosetta

Submitted by AdoCbl on Wed, 2015-09-23 11:49
Category: 
Compilation

I have been using ROSIE for a while now and am wondering what is the easiest way to transition to Rosetta. For example, is the code needed to make all the files in the tar archives for ROSIE docking2 and symmetric_docking jobs available? If so, where can I find this code? Is this code included in some of the many files included in the tar archives ROSIE makes for each job? If so, which files? It would be great if I could start with this code and adapt it as desired to do more complicated things in Rosetta.

Thanks!

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ROSIE - General

compile error on OS X Yosemite

Submitted by jlburkhead on Sun, 2015-09-20 16:27
Category: 
Compilation

I amt trying to install the lastest release of Rosetta on Mac OS Yosemite. 

The build quits on the following error:

src/utility/thread/backwards_thread_local.hh:19:9: error: keyword is hidden by macro definition [-Werror,-Wkeyword-macro]

#define thread_local

        ^

1 error generated.

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Rosetta 3 - Build/Install

Rosetta source + binaries

Submitted by zsun12 on Tue, 2015-09-15 06:49
Category: 
Compilation

Dear Rosetta Users:

I recently installed Rosetta 3.5 onto a linux box. There are two different building packages distributed online. One is "Rosetta source" and the other one is "Rosetta source + binaries for linux". I downloaded the latter one and complied it successfully followed the instructions. But I am just wondering if I ever need to compile it if it came with binaries. Thank you very much!

Regards,

Zuodong

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Rosetta 3 - Build/Install

Namespace PyRosetta Build for Windows?

Submitted by protos_heis on Sat, 2015-08-15 10:49
Category: 
Compilation

Hello everyone. I was wondering if there was any intention to ever generate a namespace PyRosetta build for Windows? I know in the past it had been said that monolith would probably be the default in the future, but I would be interested in a namespace build for Windows because namespace seems to use much less memory than monolith.

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PyRosetta - General

all warnings being treated as errors

Submitted by lah435 on Fri, 2015-07-03 15:31
Category: 
Compilation

My Rosetta build fails with: "scons: building terminated because of errors." However the errors really only appear to be warnings: "cc1plus: all warnings being treated as errors" (see below) How can I get scons to treat warnings as warnings and not as errors?

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Rosetta 3 - Build/Install

Rosetta demos error

Submitted by jlburkhead on Thu, 2015-07-02 17:23
Category: 
Compilation

Perhaps this is a simple error due to my minimal experience, but I appear to have a good install of Rosetta on a new machine (MacOS 10.10.3). I went to run the demos and keep getting the following error:

Encounter error while executing: bash /Users/jlburkhead/Desktop/Rosetta/demos/public.run/abinitio/command.sh
*** Test abinitio did not run! Check your --mode flag and paths. [2015-07-02 15:39:53.664224]
Finished abinitio in 0 seconds [~ 1 test (100%) started, 0 in queue, 0 running]

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Rosetta 3 - Build/Install

Error during compile

Submitted by aloshbau on Sun, 2015-06-07 16:29
Category: 
Compilation

I have the rosetta git repository checked out and am getting an error when I try to compile. The error states that many files are missing. I'm not sure how to trouble shoot this. Thanks!

> git pull
etc etc 100% complete

> cd /Rosetta/main/source
> ./scons.py -j4 mode=release bin

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Rosetta 3 - Build/Install

utility::thread namespace error while trying to build with boost_thread

Submitted by ndousis on Tue, 2015-05-19 08:37
Category: 
Compilation

Hello, I'm trying to build Rosetta 2015-.12.57698 in Ubuntu 14.04.2 LTS using gcc 4.8.2. I can successfully build Rosetta using:

./scons.py -j2 bin mode=release

 

but when I try with "extras=boost_thread" (i.e., ./scons.py -j2 bin mode=release extras=boost_thread), I get the following error:

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Rosetta 3 - Build/Install

multiprocessor build not working

Submitted by starone on Mon, 2015-05-11 11:59
Category: 
Compilation

(While I have 30+ years in tech, I am not a unix person)

I have a Dell Precision with Dual Zeon processors with a total of 16 cores. I was able to successfully build Rosetta, however, when I tried to do it again with the "extras=mpi" flag I got an error;

"mpiCC: Not Found"

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