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compile error on OS X Yosemite

Category: 
Compilation

I amt trying to install the lastest release of Rosetta on Mac OS Yosemite. 

The build quits on the following error:

src/utility/thread/backwards_thread_local.hh:19:9: error: keyword is hidden by macro definition [-Werror,-Wkeyword-macro]

#define thread_local

        ^

1 error generated.

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Rosetta source + binaries

Category: 
Compilation

Dear Rosetta Users:

I recently installed Rosetta 3.5 onto a linux box. There are two different building packages distributed online. One is "Rosetta source" and the other one is "Rosetta source + binaries for linux". I downloaded the latter one and complied it successfully followed the instructions. But I am just wondering if I ever need to compile it if it came with binaries. Thank you very much!

Regards,

Zuodong

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Namespace PyRosetta Build for Windows?

Category: 
Compilation

Hello everyone. I was wondering if there was any intention to ever generate a namespace PyRosetta build for Windows? I know in the past it had been said that monolith would probably be the default in the future, but I would be interested in a namespace build for Windows because namespace seems to use much less memory than monolith.

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all warnings being treated as errors

Category: 
Compilation

My Rosetta build fails with: "scons: building terminated because of errors." However the errors really only appear to be warnings: "cc1plus: all warnings being treated as errors" (see below) How can I get scons to treat warnings as warnings and not as errors?

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Rosetta demos error

Category: 
Compilation

Perhaps this is a simple error due to my minimal experience, but I appear to have a good install of Rosetta on a new machine (MacOS 10.10.3). I went to run the demos and keep getting the following error:

Encounter error while executing: bash /Users/jlburkhead/Desktop/Rosetta/demos/public.run/abinitio/command.sh
*** Test abinitio did not run! Check your --mode flag and paths. [2015-07-02 15:39:53.664224]
Finished abinitio in 0 seconds [~ 1 test (100%) started, 0 in queue, 0 running]

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Error during compile

Category: 
Compilation

I have the rosetta git repository checked out and am getting an error when I try to compile. The error states that many files are missing. I'm not sure how to trouble shoot this. Thanks!

> git pull
etc etc 100% complete

> cd /Rosetta/main/source
> ./scons.py -j4 mode=release bin

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utility::thread namespace error while trying to build with boost_thread

Category: 
Compilation

Hello, I'm trying to build Rosetta 2015-.12.57698 in Ubuntu 14.04.2 LTS using gcc 4.8.2. I can successfully build Rosetta using:

./scons.py -j2 bin mode=release

 

but when I try with "extras=boost_thread" (i.e., ./scons.py -j2 bin mode=release extras=boost_thread), I get the following error:

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multiprocessor build not working

Category: 
Compilation

(While I have 30+ years in tech, I am not a unix person)

I have a Dell Precision with Dual Zeon processors with a total of 16 cores. I was able to successfully build Rosetta, however, when I tried to do it again with the "extras=mpi" flag I got an error;

"mpiCC: Not Found"

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loopmodel mpi build fail

Category: 
Compilation

Dear Rosetta Developers

I'm quite new to Rosetta. Recently, I want to perform a loop modeling using Rosetta. So I want to compile Rosetta-3.5 on our cluster.
[root@c02125 ~]# cat /proc/version
Linux version 2.6.32-220.el6.x86_64 (mockbuild@c6b18n3.bsys.dev.centos.org) (gcc version 4.4.6 20110731 (Red Hat 4.4.6-3) (GCC) ) #1 SMP Tue Dec 6 19:48:22 GMT 2011

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