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Compilation

Error of building abinitiorelax on macOS 14

Category: 
Compilation

Undefined symbols for architecture x86_64:

  "protocols::abinitio::ResolutionSwitcher::ResolutionSwitcher(core::pose::Pose const&, bool, bool, bool)", referenced from:

      protocols::moves::MonteCarlo::boltzmann(core::pose::Pose&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, double, double) in MonteCarlo.os

  "vtable for protocols::abinitio::ResolutionSwitcher", referenced from:

Post Situation: 

Pyrosetta conda install not accessing Rosetta features

Category: 
Compilation

Hey yall, 

 Im not really sure how this all works so I'll just describe my phenomenon. Im running Ubuntu18.04. I switched using the conda installer to install the latest build of Pyrosetta4, but then I noticed I was missing some of the features which are pulled from Rosetta. The specific example I am working with is the ShapeComplimentarityCalculator example. When I install from the conda so that the latest Pyrosetta is running from :

Post Situation: 

PyMOLMover not working in conda

Category: 
Compilation

Hi,

I just set up everything in conda environment, and everything seems working great, except that I can't get pymol mover working - when I run PyMOLRosettaServer.py, I get:

PyMOL not running, entering library mode (experimental)

pyMOL <---> PyRosetta link started!

at 127.0.0.1 port 65000

despite that my pymol is running perfectly fine. What should I do to make pymol mover work? Any help would be very appreciated.

Post Situation: 

ERROR ON MAC ROSETTA

Category: 
Compilation

Good afternoon,

I downloaded the rosetta bundle with binaries for the Mac. When trying to compile the suite with ‘./scons.py mode=release bin’ I keep getting this error message.

src/protocols/antibody/database/CDRSetOptionsParser.cc:81:8: error: reference to 'core' is ambiguous

        for ( core::Size i = 1; i <= core::Size(CDRNameEnum_proto_total); ++i ) {

              ^

src/core/types.hh:32:11: note: candidate found by name lookup is 'core'

namespace core {

          ^

Post Situation: 

Rosetta Antibody: Unable to open file and terminates

Category: 
Compilation

Hello, please note I'm revising my posting with some major updates, apologies to the 9 viewers who have come here prior as this will read completely different.

 

I'm encountering a read error with antibody_H3. Below is the executable I ran (I've also reproduced the error with .static mode):

mpiexec -np 4 $ROSETTA3/bin/antibody_H3.cxx11threadmpiserialization.linuxgccrelease \
  @abH3.flags

abH3.flags looks just like:

Post Situation: 

PyRosetta on Ubuntu 16.04 build error

Category: 
Compilation

- OS type/version/arch:
Linux Ubuntu 16.04  (on an Azure virtual machine)
- Python version:
3.5

- Version of PyRosetta including SVN revision number.
PyRosetta4.Release.python35.ubuntu.release-236.tar.bz2

- Version of Rosetta:
Rosetta 3.11 for Linux

 

Hello, I've installed PyRosetta and upon importing in Python3.5 I receive the following error:

Post Situation: 

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