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Compilation

Confusion for Input Tutorial

Category: 
Compilation

Hi All,

I have downloaded Rosetta 3.11 and built it with Scons.py using 

$ ./scons.py -j 4 mode=release bin 

The building of the binaries seems to work correctly providing me with:

scons: done building targets.

 

I am now attempting to familiarize myself with Rosetta by traversing the tutorials starting with the Input & Output Tutorial so I am within this directory:

Post Situation: 

compiling with intel c++ compiler

Category: 
Compilation

Intel compiler has problem dealing with defaulted and virtualized copy assignment operator, reported here.

https://software.intel.com/en-us/forums/intel-c-compiler/topic/837004

Because of this bug, compilation with intel compiler fails at `rosetta_bin_linux_2019.35.60890_bundle/main/source/src/protocols/genetic_algorithm/Entity.hh` line 55.

By implementing it explicitly, or removing "virtual" seems to be a solution.

 

Post Situation: 

./scons.py error in building

Category: 
Compilation

I am in the stage of trying to install and build rosetta and I have reached the point where I am using scons.py.

I have been following the guide (https://www.rosettacommons.org/demos/latest/tutorials/install_build/install_build) so far, but I reach a road block when I build with scons.py. my commands and the results are as follows:

Post Situation: 

Cluster Compile Error: g++ ---no-as-needed

Category: 
Compilation

Hi,

I'm trying to install Rosetta 2019.22 in my Home directory of a cluster (which I have done successfully on a different cluster in the past).

However, I'm getting an error:

-------------------------------------------------------------------

Post Situation: 

Linux Ubuntu build is missing Dynamically Linked Libraries (fail during unit test)

Category: 
Compilation

 Hello,

I've installed Rosetta 3.11 for Linux ubuntu 16.04 without any failure.

However, I encountered some missing binaries after running unit tests. This is the general command I use for the unit test.

python scons.py -j #numproc mode=debug cat=test

 

The snippet below is the output returned from the unit test.

Post Situation: 

rosetta mpi build

Category: 
Compilation

I'm trying to build rosetta with mpi and found that because of file `src/utility/crash_report.cc` line 178 lacks semicolon at the end of the line it fails to build.

This happens with version 3.11 and 2019.40 (latest).

And I want to ask that is it able to build rosetta with cmake?

I'm currently trying to build by cmake at directory `cmake/build_sharedmpi` with ninja and intel compiler but it fails to build.

Is there any suitable compiler for the build?(maybe gcc?)

 

Post Situation: 

Rosetta Install, I Am Perplexed

Category: 
Compilation

I am having an interesting time trying to compile/install the source. I obtained an academic license, and downloaded the latest stable release, but it refuses to compile.

 

Specs/Details/Code:

Ubuntu 18.04.1

Rosetta 2019.35/31 ( I have tried both )

From terminal I run:

~$: cd my/rosetta/dir/main/source

Post Situation: 

Can I use rosetta binaries built in one linux system to another linux system?

Category: 
Compilation

Dear Friends,

 

I have successfully built "mpi" binaries on my ubuntu 18.04. I want to run rosetta on my centos6.9 (with "Openmpi") machine too; can I simply copy the binaries from my ubuntu to centos  and run rosetta using "mpi" there? thank you!

 

 

Post Situation: 

Error when installing rosetta on centos6.9?

Category: 
Compilation

Dear Friends,

 

I am trying to install rosetta on centos 6.9 as a non-root user. Python version is 2.7. OPenmpi is installed too. But, when I run this below command I get this error: (it's the end section of the error)

Post Situation: 

How to uninstall and install rosetta using "extras=mpi'?

Category: 
Compilation

Dear Friends,

 

I compiled rosetta using :

 

./scons.py -j <number_of_cores_to_use> mode=release bin

But, since I have 20 cores, and I want to distribute the runs across all cores, I want to use "MPI" options. Could you please let me know how can I uninstall and install rosetta using "MPI" option? thanks@!

Post Situation: 

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