You are here

Compilation

how to find help informations on rosetta_scripts in rosetta3.10

Category: 
Compilation

Hi,

I am just learning how to use rosetta_scripts and I do not know how to find some descriptions on example xml and its contents in rosetta suit. I am wondering whether anyone can help out. I would much appreciated.

I want to find some help information on the alanine_scan.xml. 

Post Situation: 

how to restore "rosetta_scripts.default.linuxgccrelease"

Category: 
Compilation

Hi,

I have rosetta installed but when using it I accidently deleted rosetta_scripts.default.linuxgccrelease. I am wondering how I can get it back. Can anyone help me, please?

Thank you very much.

Jinyan

 

Post Situation: 

debug rosetta_scripts FunFolDes run

Category: 
Compilation

I'm running a FunFolDes and it works for one protein, but outputs segmentation fault on other three. I checked all the proteins contain standard amino acids, no cys.

Admin installed debug version on our cluster and said to run ml rosetta/2019.14.debug, but i can't find anywhere how to run debug version.

i was running 

Post Situation: 

Where to find old version of Rosetta with git version number

Category: 
Compilation

Hi, there:
    I am reading some papers using Rosetta for modeling work. In the papers, they mentioned rosetta git version number. I am just wondering  if anyone can tell me where I can find some old version of rosetta according to git version number. Thank you very much for your help.

 

Best,

Mao

Post Situation: 

bin folder does not appear after compiling

Category: 
Compilation

Hello, 

I've previously never had trouble downloading Rosetta (I've done it twice successfully before) until now.

I'm trying to install Rosetta on Linux 3.1. When I go to Rosetta/main/source and type in ./scons.py -j3 mode=release bin it doesn't ever throw an error, but the bin file does not appear. 

Does anyone know how I can fix this?

Thank you

Post Situation: 

SCONS fails compiling legacy minirosetta on g++ error

Category: 
Compilation

Hi:

I am trying to compile minirosetta for a legacy application, but the scons file has a problem with my GCC and even clang build.  I get this error on compile attempt, and I have sucessfully compiled the most recent rosetta build on other ocassions.

Post Situation: 

/usr/bin/ld: cannot find -lsource

Category: 
Compilation

when i build the denovo_density.cc,i got this problem:
/usr/bin/ld: cannot find  -lsource

I search /usr/bin and do not find there is a dlb name "libsource",so i use apt-get to install libsource-highlight-so(no libsource for install),but it does not works

So where could i find this lib

Post Situation: 

Updating databases and weekly update

Category: 
Compilation

Hi,

I already have rosetta compiled in my linux workstation and it is working fine. Few questions regarding  regular updating of databases. How should I update the databases of rosetta. I know that there are weekly release for rosetta updating these release is enough. whether the weekly release has all the relevant updated database.   How  do I update the rosetta. Whether I have to recompile the source code from the weekly updates. These are very basic questions and your response will be greatly appreciated.

Thanking you

Post Situation: 

Error compilation Phenix-Rosetta interface

Category: 
Compilation

Hello!

I have been trying to set up the Phenix-Rosetta interface (phenix.rosetta.run_phenix_interface) by compiling rosetta (rosetta_bin_linux_2019.14.60699_bundle) with the command: ./scons.py -j4 bin mode=release extras=python. However, I get the following error:

Post Situation: 

Pages

Subscribe to RSS - Compilation