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Error with filter in rosseta_scripts

Submitted by Osmany Guirola on Mon, 2020-05-11 04:52
Category: 
Design

Hi 

i am working inthe design of peptides using the genkic mover. I am trying to implement a filter with "PeptideInternalHbondsFilter" to remove unwanted structures. When i run the rosetta_scripts  command this is the output.

From line 42:
Error: Element 'PeptideInternalHbondsFilter': This element is not expected.

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Rosetta 3 - General

BUG REPORT: Remodel Resfile ERROR: LEU was added more than once?

Submitted by daniloboskovic on Wed, 2020-04-29 01:17
Category: 
Design

I triple checked my protein PDB file, and i used the script to get a blueprint file. It has no chain definitions and is perfectly in order. Error happens when a succesful closure is made. If the closure is not successful, it continues. Also, if i set G or POLAR instead of ALLA, it works.

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Rosetta 3 - Applications

RosettaDesign error with Option file open failed

Submitted by xingqing326 on Sun, 2020-04-19 01:56
Category: 
Design

Dear users and developers,

I was running RosettaDesign and an error was reported as "[FILE]: src/utility/options/OptionCollection.cc

[LINE]: 536

[START_MESSAGE]

Option file open failed for: '/**/general_FD.flags'".  

This flag file worked on other server previously. Is this an error with compiling Rosetta or with the flag file? Could anyone please give some suggestions about how to fix this? Thank you so much.

Best,

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Rosetta 3 - Applications

Breaking fastDesign into more stages or writing something custom

Submitted by broomsday on Mon, 2020-03-16 06:52
Category: 
Design

I know that rosetta_scripts XML protocols can be run in PyRosetta, and I think there is also a specfic PyRosetta version of fastDesign.  But I'm wondering to what extent the underlying functions used in fastDesign (e.g. modifying constraint strengths, modifying vdw repulsion terms) can be written in PyRosetta directly such that some customization would be possible?

 

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PyRosetta - Applications

application for affinity optimization

Submitted by wentlewi on Fri, 2020-03-13 03:24
Category: 
Design

Hello

Which application is suited for increasing affinity between 2 proteins? I would like to specify ranges of residues to be mutated in only 1 of the proteins/chains, e.g. in a resfile. 

Essentially I want to do something like the opt-dG application in RAbD, but with ranges of residues a protein domain that is not an antibody. Can the opt-dG do this?

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Rosetta 3 - Applications

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