Docking

Hi

I've been wondering why docking protocol moves protein which i dont want to be moved

so in my case, I have a complex PDB file with chain A, B, and C. 

A is a small protein, and B and C is neighboured together, and C is the receptor

What i want to do is docking A to C, while B and C is not moved or designed.

so i made a xml script like below:

Hi everyone,

I want to dock a transition state model at the zinc site of human carbonic anhydrase II and redesign the protein. According to the paper (Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis. Nat Chem Biol. 2012 Feb 5;8(3):294-300. doi: 10.1038/nchembio.777.), I use ~/rosetta/tools/zinc_site_redesign module to do my job. Cleaning of PDB was successful, but when I tried to align the protein PDB with my transition state model, error occured:

Hi Steven, Rocco, et al., 

Hello everyone,

I'm using Rosetta's docking_ Protocol does the docking of two proteins (one protein is double chain and the other protein is single chain), but when I run the command:

$ROSETTA/main/source/bin/docking_protocol.static.linuxgccrelease @flag_local_docking

It explains that "Cannot compute center of mass of zero residues! ". How to solve this problem?

My parameter settings are as follows: