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Score.sc file showing total score 0 for all protein structures created

Submitted by aanshi on Wed, 2022-11-23 11:13
Category: 
Scoring

Hello, I am trying to use Rosetta to design the interface of my protein and would like to rank the predicted structures based on their scores however, after running the job, all the files show 0 for the total score. Could anyone take a look at my xml script and flags file (in the pdf file) to see if I'm missing something or how else to fix this issue? Thanks in advance!

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Rosetta 3 - Applications

Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations.

Submitted by He Xiao on Mon, 2022-11-07 03:41
Category: 
Scoring

Hello,

the output files, *.ga.entities and *.ga.generations, were produced by sequence_tolerance application. 

When I tried to use sequence_tolerance.R processing the output files, I got the following error:

> source("/usr/local/rosetta_src_2021.16.61629_bundle/main/tools/analysis/apps/sequence_tolerance.R")

> process_seqtol("./2I0L_A_C_V2006_0001.ga.entities")

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Rosetta 3 - General

ERROR: Unable to open weights/patch file

Submitted by almeida85 on Tue, 2022-08-09 05:33
Category: 
Scoring

Hello,

I am getting the following error:

ERROR: Unable to open weights/patch file. None of (./)ref2015 or (./)ref2015.wts or /cluster/rosetta/bin/mpi/../database/scoring/weights/ref2015 or /cluster/rosetta/bin/mpi/../database/scoring/weights/ref2015.wts exist

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Rosetta 3 - General

Per residue total score

Submitted by johnnytam100 on Wed, 2022-07-13 21:57
Category: 
Scoring

Hi Rosetta Team!

I read from the scoring tutorial this line

A rule of thumb: -1 to -3 REU per residue is typical while scoring a refined structure with ref2015 score function.

May I know if it is possible to directly call this per residue total score during scoring?

Thank you.

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Rosetta 3 - Applications

Output and Input Tutorial

Submitted by jgustat on Fri, 2022-07-01 13:07
Category: 
Scoring

 After I had moved to the input_file directory following the Controlling Input and Output in Rosetta,I ran, 

$ROSETTA3/bin/score_jd2.default.linuxgccrelease -in:file:s input_files/1qys.pdb

and I got the output,

-bash: /bin/score_jd2.default.linuxgccrelease: No such file or directory. 

What would you recommend doing?

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Forums: 
Rosetta 3 - General

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