The problem has been solved
Hi,
I'm receiving the following error message:
I run docking_protocol parallelly by mpi (Command: mpiexec -np 10 $ROSETTA_BIN/docking_protocol.mpi.linuxclangrelease @flag_docking).
But the error below occurred.
[ERROR]
-----------------------------------------------------------------------------
Primary job terminated normally, but 1 process returned.
a non-zero exit code. Per user-direction, the job has been aborted.
I'm trying to build Rosetta-3.13 "rosetta.source.release-334" with the following command:
./scons.py mode=release bin extras=mpi
I have also updated the site.settings file to prepend the mpicxx and mpicc compilers for openmpi installed in my system.
I got the following error:
ld: warning: ignoring file /opt/programs/openmpi/4.1.4/lib/libmpi.dylib, building for macOS-x86_64 but attempting to link with file built for macOS-arm64
.... lots of lines...
Why are 'fa_rep' and 'fa_intra_rep' higher in 'ref2015_soft.wts' than in 'ref2015.wts'?
So far I thought the soft score function is supposed to feature lower repulsive terms.
ref2015_soft.wts:
I am following the rosetta tutorials and run into an error when attempting to relax a pdb for refinement. The "flag_input_relax" file cannot be opened by rosetta, even though I've granted myself full permissions and even changed it into an executable via chmod 755. I made a copy of the file and it could not open the copy either. Below is the command that gives me the error:
rosetta/main/source/bin/relax.default.macosclangrelease -in:file:s ~/rosetta/main/demos/tutorials/input_and_output/input_files/from_rcsb/1qys.pdb flag_input_relax
I am working with a protein with a bound small molecule (non-covalent). I've managed in creating parameters for the ligand and relaxing the complex following this workflow: https://new.rosettacommons.org/demos/latest/public/relax_around_chemically_bound_ligand/README
Hello,
I am trying to run mp_domain_assembly protocol via the cluster and getting this error:
/truba/home/aniyaz/softs/rosetta/main/source/bin/mp_domain_assembly.mpi.linuxgccrelease: symbol lookup error: /truba/home/aniyaz/softs/rosetta/main/source/build/src/release/linux/3.10/64/x86/gcc/4.8/mpi/libcore.2.so: undefined symbol: _ZN9CifString12UnknownValueE
After several same rows it ended up with the Exit code: 127
Hi there,
I would like to log in with my github credentials - but it says that my academic address is not verified during Rosie login
My acadamic institution is: University Lyon 1 (France) and the domain is @univ-lyon1.fr
Thank you for your help.
Stephanie
