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Simplest rosetta compilation

Submitted by dnamkr on Sat, 2022-05-28 11:41
Category: 
Compilation

I used to compile rosetta with mode=release ~5 yrs ago with no problem.

But now I can't..

With

rosetta_bin_linux_2021.16.61629_bundle

Red Hat Enterprise Linux Workstation release 6.6 (Santiago)
Release:    6.6

I tried

scons.py -j4 bin mode=release

Then, I see

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Rosetta 3 - Build/Install

rosetta.build_phenix_interface on fedora 36

Submitted by vcalderone on Wed, 2022-05-25 02:11
Category: 
Compilation

This is for those who are interested in building rosetta_phenix_interface on fedora 36 or in general using gcc 12.1.1 20220507.

I had no problem compiling the phenix interface using rosetta.source.release-314 on fedora 36 after two little tweaks:

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Rosetta 3 - Build/Install

Pepspec error

Submitted by almeida85 on Mon, 2022-05-02 04:07
Category: 
Design

Hello,

I am using pepspec in design mode, working with a peptide bound to a protein pocket. When I run the command (pepspec.linuxgccrelease -database $ROSETTA_DB @spec.args) I get the following error:

ERROR: Error in core::conformation::Conformation::residue(): The sequence position requested was 0.  Pose numbering starts at 1.

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Rosetta 3 - Applications

abinitio demo is not progressing - new install

Submitted by jtpi6174 on Thu, 2022-03-24 03:49
Category: 
Compilation

Hey, I am a relatively new user and my University recently got an academic license and installed Rosetta on our high performance computing for my PhD in de novo design after requesting. I am trying to run the abinitio demo contained within "/rosetta/3.13/gcc-9.3.0+openmpi-4.0.4/rosetta_src_2021.16.61629_bundle/main/demos/public/abinitio" but I am running into a strange error.

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Rosetta 3 - General

How do I change the default Compiler for Rosetta？

Submitted by pagumaaaaa on Wed, 2022-03-16 00:23
Category: 
Structure prediction

Hello Rosetta users,

 

I have a few questions with respect to antibody modelling in Rosetta.

 

The current version of Rosetta I'm using is a pre-compiled version 3.13 of Linux.  I always get an error when I perform the first step of Antibody Modeling:   

antibody.static.linuxgccrelease \

    -fasta antibody_chains.fasta

 

I checked and found that the solution to this problem was to install a higher version of GCC.  

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Rosetta 3 - Applications

CONDA_OVERRIDE_GLIBC=2.27

Submitted by matteoferla on Thu, 2022-03-10 09:59
Category: 
PyRosetta

Not a question, but a note of an issue to save anyone getting lost by it

I had a spot of bother installing PyRosetta on a cluster running Ubuntu as PyRosetta was giving: 

lib64/libc.so.6: version `GLIBC_2.27' not found

(Dejavu of pytorch, anyone?)
To fix it the system environment CONDA_OVERRIDE_GLIBC=2.27 does the trick:

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PyRosetta - Build/Install

[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point.

Submitted by dgm3 on Sun, 2021-12-26 18:32
Category: 
Loop Modeling

Hello,

I am trying to use the LoopModelerMover to relax a couple of loops in a protein complex. I would like to let Rosetta select cutpoints automatically so I leave the cutpoints set to 0. An example script is attached as a text file. I have tried specifying the loops as loop subtags and as a loops file, and in both cases I get this error. 

ERROR: Can't build a fold tree from a loop with an unspecified cut point.

 

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Rosetta 3 - Applications

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