The problem hasn't been solved
Hello,
I am using simple_cycpep_predict in design mode to find derivatives of a peptide for disulfide cyclization. For the -cyclic_peptide:allowed_residues_by_position option I am using the following file:
I encountered this error while trying to login to ROSIE:Your GitHub account does not have verified academic email address! My academic domain ( @kribb.re.kr ) cannot be verified during login to rosie. My institution is public research organization in south Korea
Thank
Hello,
I am using Chemicel-Shift-Rosetta for protein structure determination and I would like to fix a cofactor in my protein. Does anyone have an idea how to do so?
Thanks!
Hello, everyone, I encountered some problems when I was doing Step 19: Actual motif grafting of RIFdocking.
First, I need to turn my scaffolding into a silent files. The command is as follows:
cat scaffolds.list | silentfrompdbsparallel > scaffolds.silent
After the command is run, I got the following error:
Hello,
I have been running this command other pdbs:
python2.7 /mnt/c/Users/No\ LOL/Desktop/Rosetta-jgustat/rosetta_bin_linux_2020.08.61146_bundle/main/tools/protein_tools/scripts/pdb_renumber.py \--norestart HER2_C_G3_A_full.pdb HER2_C_G3_A_full.pdb
and it has worked. Yet when I run it for my current pdb, it produces this error:
Greetings,
I'm trying to perform an Ensemble Docking using RosettaDock 4.0 as the protocol. The structures were relaxed, and ensembles generated for both proteins. Once the runs start using the MPI version:
$ mpirun -np 24 --hostfile $PBS_NODEFILE docking_protocol.mpi.linuxgccrelease -in:file:s ../input/4udt_AB_prepack.pdb -in:file:native ../input/4udt_xtal.pdb -unboundrot ../input/4UDT_AB_renum_noHET.pdb -nstruct 5000 -ensemble1 ensemble/4udt_A_ensemblelist -ensemble2 ensemble/4udt_B_ensemblelist -partners A_B @dock_ensemble_flags
Hello,
I encountered this error while trying to login to ROSIE:Your GitHub account does not have verified academic email address!
My email is t.postmus@sanquin.nl and the orginization is Sanquin.
Kind regards,
Tim
Hello, i am trying to relax an enzyme with a co-factor (nadp) but whenever I do, the resulting structure looks wrong.
I use the NADP structure from pubchem as a starting point, then molfile2params structure and copy paste the returned LG_0001.pdb to my protein.
i then run the following code:
I have logged in Rosetta Commons.
But it seems that I have to log in at another website,
west.rosettacommon.org
so what is the username and password?
I have used the same information here but it failed.
