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Hello,

I am trying to run the recess-turner function with the following command:

recces_turner.macosclangrelease -score:weights stepwise/rna/turner -seq1 gu  -seq2 [2MA]c -recces:n_cycle 9000000 -recces:temps 0.8 1 1.4 1.8 3 7 30 -st_weights 9.024828183205116 18.24157438187578 22.310063998885838 25.608533286161883 25.949659063278826 25.027484033009934 -recces:out_prefix ST -save_score_terms 

Hi, all,

I am currently trying to run Rifdock, which I compiled according to the instructions in this repo (https://github.com/rifdock/rifdock). However, everytime I pass it a *.pdb input file, I get the following error:

=================================================== preparing target ===================================================

Hello everyone,

By chance, I tried several times relax module for one same protein structure.

I got all different relaxed energy socres.

Which score is representive for this protein structure?

And of two similar structures mutated by 1 or 2 different positions, which structure can have the better structure?

By what criteria did you think that?

Hi,

I've been trying to use the Anibody Designer but i was unable to use PyIgClassify webserver to renumber and label the CDRs in my PDB file. I am also unable to get it to find CDRs in any antibody pdb file even thoughs its within the database. I would also like to find the schema for how the CDRs are marked within the text of the renumbered PDB file. Any help would be appreciated.

Thanks,

Will