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Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations.

Category: 
Scoring

Hello,

the output files, *.ga.entities and *.ga.generations, were produced by sequence_tolerance application. 

When I tried to use sequence_tolerance.R processing the output files, I got the following error:

> source("/usr/local/rosetta_src_2021.16.61629_bundle/main/tools/analysis/apps/sequence_tolerance.R")

> process_seqtol("./2I0L_A_C_V2006_0001.ga.entities")

Post Situation: 

%time results = list(xml_obj(pose_obj)) error

Category: 
PyRosetta

08.02-Ligand-Docking-pyrosetta.distributed.ipynb

When I ran the following syntax in this file, an error came out and it did not proceed.

if not os.getenv("DEBUG"):

    %time results = list(xml_obj(pose_obj))

I also set up Conda on Google Collabor
There is an error, do you know how to solve it?

The results of the implementation were as follows

 

Post Situation: 

Issues compiling Rosetta on stampede2

Category: 
Compilation

Hi everyone,

I am trying to compile rosetta3.13 on stampede2 using the SCons assistant as described in the documentation. 

I am using the command: 

./scons.py -j1 bin mode=release bin extras=mpi

which has repeatedly given the error

Post Situation: 

Failure to produce a cst file

Category: 
Constraints

Hi, I generated a mincst.log using the below command:

minimize_with_cst.default.linuxgccrelease -s fe.pdb  -in:file:fullatom -ignore_unrecognized_res -fa_max_dis 9.0 -database /home/protein-institute/ROSETTA/rosetta_bin_linux_2020.08.61146_bundle/main/database -ddg::harmonic_ca_tether 0.5 -ddg::constraint_weight 1.0 -ddg::out_pdb_prefix min_cst_0.5 -ddg::sc_min_only false > mincst.log

then produced mincst.log file was employed for generating a cst file as input for the high-resolution protocol of ddg_monomer using the below command:

Post Situation: 

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