The problem hasn't been solved
Hi,
I tried to dock a ligand protein to a receptor (a dimer) by using the rosettadock websever, but unfortunately it failed. I did not get the docked conformations. My job id is 4910. In the 2.docking.output.0 file, there is the error message:
Hi,
I ran into some error when compiling Rosetta 3.9. I ran the command scons -j4 mode=release bin.
Here is the error.
Hello,
I am running a xml script with rosetta_scripts (Rosetta 3.14, v2022.11) in my HPC cluster and I am getting the following error:
Hi,
I am running snugdock for Antigen-Antibody docking. As I can see from the output pdb files, the loops are moving during docking. After reading snugdock paper I do see the reason for that.
But in my case, I would like to fix the backbone of both Antigen and Antibody (for loops and nonloop regions).
I tried to include "-relax:bb_move false" flag, but it seems like it is doing nothing.
does anyone know how to fix the backbone during snugdock docking?
Many Thanks,
Greetings,
I am trying to reproduce the results of paper "Computational design of a homotrimeric metalloprotein with a trisbipyridyl core". I found that this research used an application named sicdock.ompstatic.linuxgccrelease to carry out docking calculations. But I can't find it in newly released Rosetta version. My foucs on Macbook can't find any application related to sicdock but only some options file and .cc file.
HI there, I wanted to log in with my github credentials - but it says:
Academic address not verified during Rosie login
My Acadamic Institution is: Novosibirsk State University, the domain is g.nsu.ru
Thank you for your help.
Dear,
ROSIE does not recognize the domain @kuleuven.be as an academic email. It belongs to KU Leuven university.
Thanks in advance,
Cecilia
Hi, sorry to bother you I am using the following function to create a packer:
Hello,
the output files, *.ga.entities and *.ga.generations, were produced by sequence_tolerance application.
When I tried to use sequence_tolerance.R processing the output files, I got the following error:
> source("/usr/local/rosetta_src_2021.16.61629_bundle/main/tools/analysis/apps/sequence_tolerance.R")
> process_seqtol("./2I0L_A_C_V2006_0001.ga.entities")
08.02-Ligand-Docking-pyrosetta.distributed.ipynb
When I ran the following syntax in this file, an error came out and it did not proceed.
if not os.getenv("DEBUG"):
%time results = list(xml_obj(pose_obj))
I also set up Conda on Google Collabor
There is an error, do you know how to solve it?
The results of the implementation were as follows
