The problem hasn't been solved
when i run the sample folding script you can find on www.pyrosetta.org/scripts i get this error:
I've been trying to assemble a poly-peptoid sequence using the make_pose_from_sequence function, however there seems to be an error in the way the polymer gets connected in the pose. For instance, the command:
make_pose_from_sequence(pose, "AAX[P02]AA", "fa_standard")
when i run the sample folding script you can find on www.pyrosetta.org/scripts i get this error: init() got unexpected keyword argument 'keep_history' does anybody have any ideas about how to solve it?
Hello,
I am planning to analyze residue interactions using residue_energy_breakdown utility as written in the documentation. However I could not find "residue_energy_breakdown" command in rosetta_source/bin.
I've built Rosetta3.3 in RedHat 5.4 by "scons bin mode=release" and build seemed to be finished without any problem.
Should I do any other things to use residue_energy_breakdown?
Thank you,
hi.................
i am new to rosetta. I have installed rosetta 3.3 in ubuntu linux 10.10. I wanted to do protein-protein docking & protein-peptide docking. so, can u help me to do this things. i have read the manuals of rosetta3.3 but i m unable to understand it correctly.Can you show me some direction to do this things & also how to create input files .pdb with only atom details for docking n other things also.............
thank you.....................
Hi!
I just downloaded the Rosetta MultiGraft and unzipped the documentation file help.tgz. However, all the text files in it are empty!
Can you please help,
Aroop
can AnchoredPDBcreator be used for inserting a helical anchor onto a surface helix?
Since, the results of Relax refinement doesn't make much differences.
Thank you very much!
Hi
I wonder if anyone has any ideas how I might do this. I have a protein where I know some of the surface exposed residues (from labelling experiments) and I was wondering if there was a way to use this as a constraint in structure production. For example is it possible to say that the amines (Nz) of lysines X,Y and Z must be solvent exposed?
Thanks for any suggestions you might have.
Best wishes
Chris
Hi, I am trying to learn Rosetta Scripts and need to see some examples. The link provided in manual: https://svn.rosettacommons.org/trac/browser/trunk/mini/demo/rosetta_scri... requires password. Anyone could help me with it?
Thank you very much!
