Unsolved

Hi,

I am new with mac osx and rosetta. I have rosetta 3.3 installed and have trouble with installation of biopython 1.59. on my mac os 10.7, have already installed Xcode 4.3.2. I have pasted the error message. Any help would be highly appreciated.
Thanks

$cd biopython-1.59
$sudo python setup.py install
running install
running build
running build_py
creating build
creating build/lib.macosx-10.7-intel-2.7
creating build/lib.macosx-10.7-intel-2.7/Bio
copying Bio/__init__.py -> build/lib.macosx-10.7-intel-2.7/Bio
copying Bio/_py3k.py -> build/lib.macosx-10.7-intel-2.7/Bio
.
.

Hi, I have Rosetta 3.4 here.
When I run cluster using parameter -cluster:input_score_filter , it seems to me the parameter is just ignored and all decoys (no matter its score is higher or lower than the limit) are considered. I got the same results no matter I set the parameter or not. I read the source file at rosetta_source/src/apps/public/cluster.cc and it seems variable input_score_filter is not used (together with some other parameters). Function GatherPosesMover::set_filter in rosetta_source/src/protocols/cluster/cluster.cc seems never invoked anywhere.

Dear ALL,
When I was looking the energy score printed in the make_pdb.cc file, I found there was code like
iunit << A( 15, "score:" ) << F( 11, 2, score ) << '\n';

What is the F()? Thank you!

I'm trying to dock three chains with RosettaScripts with Rosetta 3.3. Docking chain C to chains AB. I.E. the partner string would be AB_C. It appears that no matter what jump number I use in the docking tag in RosettaScripts, it always tries to dock the second and third chains to the first chain of the structure (always 1_23) corresponding to a jump number of 1. Is this a known issue with the docking mover in Rosetta Scripts?