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I am a PhD student in biochemistry at the Institute of Biochemistry and Biophysics (IBB) in Tehran, Iran, but my GitHub accou

Submitted by mrabolhasan on Mon, 2024-02-19 22:41
Category: 
ROSIE

Your GitHub account does not have verified academic email address! Please visit https://github.com/settings/emails and setup it! If your institution _is academic_ please contact our support forum at [https://www.rosettacommons.org/forums/rosie/rosie-general] and provide your institution name and domain address.

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Unsolved
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ROSIE - General

Rigidifying ligand

Submitted by Daniel_Levin on Sun, 2024-02-18 12:10
Category: 
Docking

I have a ligand with which I am trying to design a pocket in a synthetic protein.

Now the ligand doesn't have any rotatble bonds, because it's carbon chain is full of conjugated bonds,

However it keeps isomerizing some of the bonds,

is there any way I could completly fix the carbon chain?

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Unsolved
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Rosetta 3 - General

Errors in RosettaAntibody distributed static linux binary

Submitted by marzen on Thu, 2024-02-08 12:12
Category: 
Compilation

Hello,

I am attempting to install a modern version of the RosettaAntibody protocol, and I’m encountering errors with the Linux binary of the protocol provided for commercial download (antibody.static.linuxgccrelease). For reference, I am using the latest available weekly release: 2023.45 from November 2023.

While other protocols from this binary distribution are working correctly in our hands, the RosettaAntibody is failing with the below compiler version error:

 

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Rosetta 3 - Build/Install

Cartesian_ddG mutfile error

Submitted by paulbo on Mon, 2024-02-05 01:25
Category: 
Design
Constraints

hello gus,

When i use catesian-ddg for protein stability, i want saturation site by all amino acied. but I Set  "1 A ALLAA" OR "C 1 ALLAA"(first site is  cys), all error.

and i type "total 9 

1

C 1 A 
1 
C 1  W 
1 
C 1  F 
1 
C 1  I
.....  " Enumerative method is OK. So， how I set mutfile more easy and clearly ? help!

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Unsolved
Forums: 
Rosetta 3 - General

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