I have PDB strucures of antigen- antibody complexs. want to studythe hydrogen bond pattern at the ineterface and also the shape complimentarity. As per the following manuscript (Kuroda et al, (2016) Bioinformatics, 32(16):2451-2456) the command line
-prevent packing true
however the command is not functioning in my rosetta installation.i can run other command line for docking but not the above mentioned command. Please any one let me know its precise location in the rosetta folder so that i can set env path in the ~/.BASHRC FILE.
Anticipating a response soon
National institute of Virology,