I am trying to run an abinito structure calculation on a natively unfolded protein. I did not provide an input pdb for this calculation. I generated the fragments from the robetta server.
This has worked in the past with other calculations but this time, I keep getting the error:
core.io.fragments: rosetta++ fileformat detected! Calling legacy reader...
terminate called after throwing an instance of 'std::out_of_range'
Any help would be appreciated.
Perhaps the sequence you're providing isn't the same length as the fragments file? This is just a guess.
I kept getting the same error until I realized the link to the blast database was not correctly set. Make sure those databases are available to the antibody application.