To whom it may concern:
Hi I want to convert my antibody structure from Chothia to IMGT. I use the following command and get an error "ERROR: Illegal value specified for option -antibody:output_ab_scheme : IMGT". I am wondering is the IMGT scheme already cancelled in the number converter program? This is a 2019.35.60890 version.
/home/rosetta_bin_linux_2019.35.60890_bundle/main/source/bin/antibody_numbering_converter.linuxgccrelease -input_ab_scheme Chothia -output_ab_scheme IMGT -s 1ahw_chothia.pdb
Best regards,
Shkai
Category:
Post Situation:
This should work - but there may be a problem in the pre-processor for the options system. It is indeed coded in there.
For now, if you use IMGT_Scheme instead of IMGT, it should work.
Use IGMT_Scheme - and any time you use the coverter for now, put the _Scheme at the end. I'll work to debug why the ones without the _Scheme on the end are tripping up the options system.
Let me update, change from -output_ab_scheme IMGT to -output_ab_scheme IMGT_Scheme works fine.
Awesome. Thanks for the update! I'm looking into how to fix it generally. Hopefully will have it fixed sometime soon.