Hello Rosetta community,
I am looking for a recent paper to cluster the output models of Rosetta ligand docking by ligand RMSD (the paper that mentions the detailed command for clustering). I studied several Rosetta papers about ligand docking such as "Assessment and Challenges of Ligand Docking into Comparative Models of G-Protein Coupled Receptor" by Nguyen or "Small-molecule ligand docking into comparative models with Rosetta" by Combs. They used BCL tool from Meiler lab, but the former paper is not recent and the commands used in the supplementary cannot be applied currently (for instance there is no bcl.exe ScoreSmallMolecule command now). The latter also did not mention the detailed commands for ligand clustering.
I appreciate your help.