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Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type"

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Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type"
#1

Hello,

I'm a new user wants to run a RosettaScripts with disulfize mover, but right after I start the scripts, I got the following crash report. Any comments or suggestions on how to solve the issues? Thanks a million.

[START_CRASH_REPORT]
[ROSETTA_VERSION]: 2020.08+release.cb1caba
[COMMIT_DATE]: 2020-02-21T14:46:08.581859
[APPLICATION]: UNKNOWN APPLICATION
[MODE]: Release
[EXTRAS]: default
[OS]: GNU/Linux
[COMPILER]: GCC version "8.3.0"
[STDLIB]: libstdc++ version 20190406
[START_OPTIONS]
NO OPTIONS SPECIFIED

[END_OPTIONS]

[START_BACKTRACE]: RAW_LIBC
/home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libcore.6.so(backtrace_string[abi:cxx11](int)+0x43) [0x7f06198572e3]
/home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libutility.so(utility::excn::Exception::Exception(char const*, int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0xe4) [0x7f061509c144]
/home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libutility.so(utility::options::OptionCollection::set_option_value_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&)+0x4bb) [0x7f0614ff7cab]
/home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libutility.so(utility::options::OptionCollection::load_option_cl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)+0x108) [0x7f0614ffa9f8]
/home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libutility.so(utility::options::OptionCollection::load(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >&, bool)+0x149) [0x7f0614ffdd39]
/home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libutility.so(utility::options::OptionCollection::load(int, char* const*, bool)+0x136) [0x7f0614ffe646]
/home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libcore.6.so(core::init::init_options(int, char**)+0x1f) [0x7f06198aa74f]
/home/zhoubin/Desktop/rosetta_3.12/main/source/build/src/release/linux/5.4/64/x86/gcc/8/default/libcore.6.so(core::init::init(int, char**)+0x29) [0x7f06198ae959]
rosetta_scripts.default.linuxgccrelease() [0x4023ba]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xeb) [0x7f061445809b]
rosetta_scripts.default.linuxgccrelease() [0x40294a]

[END_BACKTRACE]

[FILE]: src/utility/options/OptionCollection.cc
[LINE]: 1153
[START_MESSAGE]
No values of the appropriate type specified for multi-valued option -in:file:s

[END_MESSAGE]
[END_CRASH_REPORT]

AttachmentSize
ROSETTA_CRASH.log3.42 KB
Category: 
Post Situation: 
Sun, 2021-02-28 08:51
zhoubin

It looks like you need to pass a pdb file using the -s option.  Or -l.  What is your cmd-line input?

Mon, 2021-03-01 08:09
jadolfbr

Here is the command line I used for running the scripts:

rosetta_scripts.static.linuxgccrelease -s <Test.pdb> -use_input_sc -nstruct 20 -ex1 -ex2 -parser:protocol DisulfScan.xml 

Thanks,

Bin

Mon, 2021-03-01 17:56
zhoubin

I realized that my filename has angle brackets, after I removed the brackets, the scripts are running smoothly. Thanks. 

Mon, 2021-03-01 22:11
zhoubin