I just downloaded Rosetta 3.0, and compiled it successfully. However, I found out that it's extremely hard to use/learn for fresh user.
Are there a step by step tutorial, or something similar which can help newbies jump-start on Rosetta?
My main purpose is to use this package and experimental constraints to predict protein structures.
I appreciate any input. Thanks!
You've looked at the manual?
http://www.rosettacommons.org/manuals/rosetta3_user_guide/
I'd guess there's a copy of it in the rosetta 3 tarball you downloaded too; the web form is probably easier to read though. Are you trying to learn to use existing protocols, or to write your own protocols? There are application-specific instructions in the manual, and two or three files on doing your own protocols.