I ran the tutorial placed in
demos/tutorials/GeneralizedKIC/exercise1/ and successfully produced 10 output structures. However, the residue ALA32 that was encompassed by the genkic mover has unwanted HN - CA bond and HN_CB bond. All the 10 output structures have this problem, and I've attached three of them. I tried to FastRelax the strucutre after genkic mover, but the unwanted bonds were still kept.
If ALA32 was mutated to GLY32, the genkic mover still produce an unwanted HN - CA bond. I am wondering if this is a bug in the program? Any solution would be much appreciated.