I have two proteins as restraint and then predict the N-terminal of one protein which interact the other protein. Which protocol I should use?
Thanks in advance
Your question is a little vague - what exactly do you have? Do you have structures of two proteins, which bind to each other through an N-terminal region of one not present in its structure?
The FloppyTail protocol is intended for sampling space of flexible tail regions, including those which bind some other partner.
You can try FloppyTail protocol.
Your question is a little vague - what exactly do you have? Do you have structures of two proteins, which bind to each other through an N-terminal region of one not present in its structure?
The FloppyTail protocol is intended for sampling space of flexible tail regions, including those which bind some other partner.