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how to relax structure constraining CA in Rosetta3.2?

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how to relax structure constraining CA in Rosetta3.2?
#1

Hi

I am wondering how to relax structure constraining CA in Rosetta3.2?

I found that each protocol contains two executable command such as:

relax.default.linuxgccrelease relax.linuxgccrelease

is there any differences between these two?

THX

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Tue, 2011-02-15 06:15
albumns

No, it's leftovers in the build system. The two symlinks point to the same place; the files should be identical.

I believe that the relax application is compatible with the generic constraint file flags mentioned in the constraints documentation in the manual.

Tue, 2011-02-15 17:19
smlewis

You can try the flag -constrain_relax_to_start_coords.

Wed, 2011-02-16 08:39
smlewis