Hi around, sorry for disturbing with my problem that I haven't found posted or solved and if it has been solved I didn't find it. I recently downloaded PyRosetta and would like to use it for docking. The easiest, I thought, is to take an example script that comes with PyRosetta - docking.py, taking the test_dock.pdb that also comes with PyRsoetta and run it to get an idea about computational time. But it doesn't work by writing:
docking.py in ()
15 print "setting up docking fold tree"
16 dock_prot = DockingProtocol() #DockingProtocol object contains many useful docking functions
---> 17 dock_prot.setup_foldtree(p)
18 # DockingProtocol().setup_foldtree(p, "E_I")
19 dock_jump = 1
AttributeError: 'DockingProtocol' object has no attribute 'setup_foldtree'
WARNING: Failure executing file:
Python 2.6.1 (r261:67515, Jun 24 2010, 21:47:49)
I tired to execute the script by typing the commands line by line but it doesn't work either. I also tried Linux and MacOs X versions of PyRosetta to assure that the problem is not caused by something that is not installed or distribution related. I'm sure there is some small stupid error that I do but not able at the state of being to find it out:-(.
Thanks for helping in advance!