Hi,im now doing the structure prediction using Abinitio way.
But when i run the command,i get this error:
ERROR: no fragment to compute secondary structure
ERROR:: Exit from: src/core/conformation/SecondaryStructure.cc line: 67
in my input files there,i already included :aat000_03_05.200_v1_3.rtf, aat000_09_05.200_v1_3.rtf and the fasta file as well...
So may i know what is the problem?
tq!
Post Situation:
Can you post your whole command line or options file?
Also, why do your fragments have .rtf as the file extension? That's not a standard extension for that flag.
oh,i already deleted the rtf,but still the same.
now,it turn to another problem.
ERROR:: Exit from: src/core/chemical/util.cc line: 429
command line:/home/byin/Desktop/rosetta/rosetta_source/bin/AbinitioRelax.linuxgccrelease @flags > folding.log
The line above that error should be something like "can't find residue type at pos ??? in sequence ???". So, that's your problem, a weird residue type in the input sequence.
You should note you are still using 3.2.1, since we upgraded to 3.3 already, and I assume 3.3 for debugging.