Hi there,
I have extracted the 5% best scores structure from 100,000+ decoys and combine them into one single silent file. After clustering I have realized their rosetta energy/score are all null. Of course, I was intend to cluster and sort them by energy. However, the score flag have been lost upon extract process. Is there any keyword to preserve their energy flags when extracting?
Post Situation:
Rosetta's scores have been lost by using the extract_pdb binary. Use the rosetta score program instead.