I've searched for details of what exactly the relax protocol does. I know that it does "agressive sampling" and basically just minimises the Rosetta energy. Is there anywhere I can get more detail than that? I've looked through the Rosetta publications and many describe different aspects of Rosetta but I haven't found any that describe specific protocols or applications. I understand that these protocols keep evolving and therefore cannot be described "for once and for all" so, is my search in vain?
I'm writing my thesis and I used "relax" to refine models. I would like to give some background info as to what it actually does. I chose the relax protocol based on the descriptions of the different protocols in the manual and after reading many favourable publications on Rosetta itself.
Any reply or just a link will be apreciated!