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ERROR: filtered_alignments.size() > 0

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ERROR: filtered_alignments.size() > 0

I've been successfully running comparative modeling jobs, but when I tried a new template pdb, I got the following error:

ERROR: filtered_alignments.size() > 0
ERROR:: Exit from: src/protocols/comparative_modeling/ line: 167

and the program stops.

I am having the darndest time trying to debug this. Has anyone run across this error before?


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Tue, 2012-01-17 13:28

The code that spits that error is trying to do some string name matching of the four-character PDB stem of a template pose versus whatever's being aligned. I would guess you've got a line in your alignments with the wrong PDB name (doesn't match the PDB file names, maybe? It appears to be matching on the first four characters.).

There are some "debug" level output statements nearby, re-running with the verbosity level high may help. (I think that's flag -out:level 500 but I'm not sure.)

Tue, 2012-01-17 13:44

You guessed right! Thanks so much.

Wed, 2012-01-18 06:00