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error with profit

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error with profit
#1

Hi,

I get an error below with profit being called on profit.in

Scan one or more sequences with a simple frequency matrix
Profile or weight matrix file: Error: Unable to open file 'QUIET' for input
Profile or weight matrix file: Error: Unable to open file 'ZONE CLEAR' for input
Died: profit terminated: Bad value for '-infile' and no more retries
256 at /home/.../immunity/antibody/scripts/ram_buildloop_wrapper4.pl line 12

__

The contents of profit.in (below), don't seem to match the expected input for profit.

QUIET
ZONE CLEAR
ATOMS CA
templatelightheavy.pdb queryL.pdb
reference templatelightheavy.pdb
mobile queryL.pdb
ZONE L4-L6
ZONE L10-L23
ZONE L35-L38
ZONE L45-L49
ZONE L57-L66
ZONE L71-L88
ZONE L98-L104
fit
WRITE queryLfitted.pdb
--
Thanks!

Post Situation: 
Thu, 2012-11-15 10:00
jchin

I forwarded this to the antibody guy (Jianqing) but he hasn't had a chance to reply, I guess.

Tue, 2012-11-20 07:47
smlewis