I am trying to perform an abinitio modelling of the full-length structure of a two domains protein, having the crystal structure of the Nterminal one. If I try to use a similar protocol as the demo of comparative modelling with end extension the program stops with the following error:
ERROR: moving_connection.icoor().is_internal() && fixed_connection.icoor().is_internal()
ERROR:: Exit from: src/core/conformation/util.cc line: 100
sometimes the first pdb that comes out is ok, but when it crashes, the position of both domains is strangely far away.
Thanks in advance!