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multiple cst files

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multiple cst files
#1

Is there a way to use multiple cst files in a structure calculation? Like this ?

-constraints:cst_file input/file1.cst
-constraints:cst_file input/file2.cst

-constraints:cst_fa_file input/file3_fa.cst
-constraints:cst_fa_file input/file4_fa.cst

Or do file1/file2 and file3/file4 have to be concatenated into one file ?

thank you !
logan

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Wed, 2013-03-20 12:16
logandonaldson

Off the top of my head, they need to be concatenated. I'll check. If you want different constraints for different inputs...that may work under the ResourceManager, but that wasn't released for 3.4 and I don't think that functionality is there for 3.5.

Wed, 2013-03-20 16:17
smlewis

The option is a StringVector (it should be a FileVector...). For most use cases, if you offer multiple arguments, it actually RANDOMIZES which one it chooses; it certainly does not read them all concatenated by default.

You may be required to use the format

-cst_file file1 file2

over
-cst_file file1
-cst_file file2

to read in multiple - which is an aside because I think you do not want to.

Wed, 2013-03-20 16:22
smlewis

Bug report filed on StringVector v. FileVector (https://carbon.structbio.vanderbilt.edu/mantisbt/view.php?id=224)

Wed, 2013-03-20 16:25
smlewis

thank you for investigating ! I will concatenate.

logan

Wed, 2013-03-20 17:02
logandonaldson