Thanks in advance for all those who help out with this issue. Using the FlexPepDock application, I have generated multiple decoys.silent files (binary) during docking. Multiple decoys.silent files were generated as I used a small cluster of 20 processors where each processor generated its own decoys_X.silent file. Now that I have successfully performed these docks, I would like to concatenate all of the decoys.silent files into a single decoys.silent file for analysis. Is it possible to simply use the method below...
cat decoys_1.silent decoys_2.silent decoys_3.silent > decoys.silent
However, I recall using a different and more complicated script when concatenating silent files in the LigandDock application.