# Possible minor mistakes in SetPyRosettaEnvironment.sh (in r21 for Ubuntu)

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Possible minor mistakes in SetPyRosettaEnvironment.sh (in r21 for Ubuntu)
#1

Dear all,
There may be some minor mistakes in the SetPyRosettaEnvironment.sh in the r21 release of PyRosetta:

On line 34 "export LD_LIBRARY_PATH=$PYROSETTA/rosetta${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH}"$PYROSETTA is not added to the LD_LIBRARY_PATH and "libboost_python.so.1.55.0.so" is consequently not found.
Corrected: "export LD_LIBRARY_PATH=$PYROSETTA:$PYROSETTA/rosetta${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH}"
(Or just move the offending so to rosseta subdir)

On line 35 "export PYROSETTA_DATABASE=$PYROSETTA/rosetta_database", but the directory is named just "database" Corrected: "export PYROSETTA_DATABASE=$PYROSETTA/database"

And I also had to delete the IPython directory, since on imports it was sometimes picking up the IPython version boundled with PyRosetta and not the 2.0.0 version i had installed systemwide.

This are all minor issues for the average unix user, but could deter some new users.

Best regards,

Ajasja

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Fri, 2014-06-20 05:10
ajasja

Sorry for the late replay, this has been fixed in the newest versions of the PyRosetta binaries.

Mon, 2014-09-08 08:43