Dear Rossetta Users,
when I run Flexpepdock protocol, the error is : "ERROR: seqpos <= size()
ERROR:: Exit from: src/core/conformation/Conformation.hh line: 289:.
Can someone here explain why this happenned?
I attach the input file below.
Best regards
Phan Vy
| Attachment | Size |
|---|---|
 strarting.txt | 375.95 KB |
Category:
Post Situation:
Can you attach your command line with any flags that you used? Does the result change at all if you remove the zinc ion?
Dear everyday847,
I removed Zinc, but the error still return (same above)
This is the flag for running prepack before running Flexpepdock protocol
s starting.pdb
-database /home/tuongvy/SW/rosetta3.4/rosetta_database
-flexpep_prepack
-ex1
-ex2aro
I got starting structure from Molecular Dynamics simulation.
Thank a lot and best regard
Phan Vy
Your "occupancy" column in the PDB is zero, which means Rosetta will ignore those atoms by default. (Leading to an empty structure.)
Use the option "-ignore_zero_occupancy false" to override this behavior and use all the atom coordinates specified in the PDB.
rmoretti!
Thank a lot for your help. It work now
Phan Vy