I am using rna_denovo prediction (FARFAR) and today I got this error message:
ERROR: Some problem with atom_id_mask in defining atom_id_map
ERROR:: Exit from: src/protocols/farna/RNA_ChunkLibrary.cc line: 154
Does anybody know, what can cause this problem and how to avoid it?
As "templates" to prediction I am using parts of RNA structures downloaded from RCSB and editet by Bio.Python and then for prepare arguments and everything I use this:
rna_denovo_setup.py -fasta ../target.fasta -s 121_145.pdb -fixed_stems -nstruct 50 -working_res .... which worked fine
Thanks for help
This section of the code recently got a bit of a re-write in late 2015. I'd recommend using a more recent weekly release, and seeing if that fixes your issue.