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Sequence Tolerance Failed

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Sequence Tolerance Failed

Dear all,


I submitted six jobs to Rosie (28069 through 28074) under the username dstork. They failed quickly with no error messages beyond "Failed * Tech support has been notified of this error" anywhere that I can see. After waiting a few weeks the issue hasn't been resolved. What can I do to get this job to work?



Post Situation: 
Tue, 2017-01-03 07:13

I looked at the first one.  The PDB has at least one flaw: the TER card inserted between chains didn't get an endline character, so it looks like this:

ATOM   4278 2HA  GLY A 314     -22.943 -27.890 -53.537  1.00  0.00              
TERATOM  37105  CA  LYS B   2      -5.906 -14.805 -49.957  1.00  0.00              
ATOM  37106  C   LYS B   2      -6.439 -13.943 -51.110  1.00  0.00              

I guess that could be the problem, especially if that was a residue you were working with.  

Tue, 2017-01-03 07:45

Thank you for your fast response, that was a good catch. I fixed the TER issue, resubmitted (28417-28422) and got the same problem. Could the issue be that between Chain A & Chain B the atom number jumps from 4278 to 37105 because this was originally a much larger file?


Fri, 2017-01-06 08:27

I expect not.  Rosetta ignores atom numbers in all cases of which I am aware.  It pays close attention to RESIDUES and their numbering, but not the atom numbers.

There don't seem to be log files for me to diagnose further.  Maybe there's a missing executable or something server side.  I'll bring it Sergey's attention.

Fri, 2017-01-06 08:48

Sergey showed me a log file I couldn't find that shows there's a bug in the script being run.  No idea when it can be fixed.

Sat, 2017-01-07 08:36

Thank you for the information and the help.

I will pursue other ways of doing the same computation, but I still hope to run it here eventually. 

Mon, 2017-01-09 06:25

Script is not fixed but only "positive" result is that app is now terminated silently. I am contacting original auhor of this app so maybe he will know what going on here...

Mon, 2017-01-09 16:37